RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SUN2Q9UH99 717 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 DOCK4Q8N1I0 1966 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 PLXNA2O75051 1894 aa16.25■□□□□ 0.19
CCDC88B-205ENST00000472524 SRRM3A6NNA2 597 aaPredicted RBP16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 KCNU1A8MYU2 1149 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 DAB1O75553 588 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 MOCS3O95396 460 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 IGLV3-19P01714 112 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 DNTTP04053 509 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 SYPP08247 313 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 SLC2A3P11169 496 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 CCR1P32246 355 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 CTSOP43234 321 aaPredicted RBP16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 SNX16P57768 344 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 RPS14P62263 151 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 SLC6A3Q01959 620 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 EIF4EBP2Q13542 120 aaPredicted RBP16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 CT47A1Q5JQC4 288 aaPredicted RBP16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 SMYD5Q6GMV2 418 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 ZCCHC9Q8N567 271 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 TMEM35BQ8NCS4 154 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 SNX19Q92543 992 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 MYO19Q96H55 970 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 VPS16Q9H269 839 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 FBRSQ9HAH7 460 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 KIAA1522Q9P206 1035 aaPredicted RBP16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 MSRB2Q9Y3D2 182 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 CABIN1Q9Y6J0 2220 aa16.24■□□□□ 0.19
CCDC88B-205ENST00000472524 SH3BP5O60239 455 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 SIN3BO75182 1162 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 GJB3O75712 270 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 UCHL3P15374 230 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 CYP11B1P15538 503 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 GGCXP38435 758 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 RNASE9P60153 205 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 RABGAP1LQ5R372 815 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 ZNF776Q68DI1 518 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 SLC26A9Q7LBE3 791 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 DHX40Q8IX18 779 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 APCDD1Q8J025 514 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 CCAR2Q8N163 923 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 CHCHD4Q8N4Q1 142 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 CADM4Q8NFZ8 388 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 ENOX1Q8TC92 643 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 DNASE2BQ8WZ79 361 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 MRGPRX3Q96LB0 322 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 PRMT1Q99873 361 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 NAA15Q9BXJ9 866 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 ERVW-1Q9UQF0 538 aa16.23■□□□□ 0.19
CCDC88B-205ENST00000472524 DOCK9Q9BZ29 2069 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 A0A1B0GTW7 788 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 METTL12A8MUP2 240 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 TTC34A8MYJ7 566 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 M0QYT0 321 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 PDGFRAP16234 1089 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 ACSL1P33121 698 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 NOS2P35228 1153 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 KLK7P49862 253 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 SULT1E1P49888 294 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 ECT2LQ008S8 904 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 CENPCQ03188 943 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 GRIK2Q13002 908 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 HNRNPA1L2Q32P51 320 aaKnown RBP16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 TTC31Q49AM3 519 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 RNF219Q5W0B1 726 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 RPL10LQ96L21 214 aaKnown RBP16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 RPRD1AQ96P16 312 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 C6orf106Q9H6K1 298 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 EIF2B4Q9UI10 523 aaKnown RBP16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 VANGL2Q9ULK5 521 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 FREM2Q5SZK8 3169 aa16.22■□□□□ 0.19
CCDC88B-205ENST00000472524 A0A1B0GVM2 712 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 TCAF2A6NFQ2 919 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 F8VZ95 297 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 TPM2P07951 284 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 SRPRAP08240 638 aaKnown RBP16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 MMEP08473 750 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 MZF1P28698 734 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 CDH5P33151 784 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 MATKP42679 507 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 STK19P49842 368 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 ZBTB16Q05516 673 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 KRT31Q15323 416 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 C2CD6Q53TS8 623 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 FAM102AQ5T9C2 384 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 TTC39BQ5VTQ0 682 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 OTUD1Q5VV17 481 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 CDKAL1Q5VV42 579 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 FBXL22Q6P050 247 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 RBM43Q6ZSC3 357 aaKnown RBP16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 NOP9Q86U38 636 aaKnown RBP16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 ERICH1Q86X53 443 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 ZDHHC17Q8IUH5 632 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 ZNF397Q8NF99 534 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 GANCQ8TET4 914 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 IGSF8Q969P0 613 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 C18orf8Q96DM3 657 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 STK33Q9BYT3 514 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 BTBD1Q9H0C5 482 aa16.21■□□□□ 0.19
CCDC88B-205ENST00000472524 SIK2Q9H0K1 926 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms