RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ZBBXA8MT70 800 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 PAGE1O75459 146 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 GCAP28676 217 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 MORN1Q5T089 497 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 CCT6BQ92526 530 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 FAM161BQ96MY7 647 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 ZNF670Q9BS34 389 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 NDFIP2Q9NV92 336 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 CSE1LP55060 971 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 STX3Q13277 289 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 PTPRCAPQ14761 206 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 TCEAL1Q15170 157 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 FAM219BQ5XKK7 198 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 MFSD5Q6N075 450 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 GSDMBQ8TAX9 411 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 DEFB118Q96PH6 123 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 NFKBIZQ9BYH8 718 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 DNAJC16Q9Y2G8 782 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 ACTL7AQ9Y615 435 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 E9PBE3 544 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 KLHL41O60662 606 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 POLBP06746 335 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 MSX2P35548 267 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 USP4Q13107 963 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 RPS27LQ71UM5 84 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 BZW1Q7L1Q6 419 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 URGCPQ8TCY9 931 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 CASP10Q92851 521 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 RMDN1Q96DB5 314 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 HNRNPABQ99729 332 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 ACTR5Q9H9F9 607 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 USH1CQ9Y6N9 552 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 SEPT4O43236 478 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 SKAP2O75563 359 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 TCN1P20061 433 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 CCR10P46092 362 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 CNGA3Q16281 694 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 NT5DC4Q86YG4 428 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 ZMIZ2Q8NF64 920 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 NSMCE1Q8WV22 266 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 TTC1Q99614 292 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 EBNA1BP2Q99848 306 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 GMIPQ9P107 970 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 CRYL1Q9Y2S2 319 aa14.07□□□□□ -0.16
CCDC88A-211ENST00000471947 SLC12A1Q13621 1099 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 LPIN1Q14693 890 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 CRYBG2Q8N1P7 616 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 OR6K2Q8NGY2 324 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 SLCO2A1Q92959 643 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 GTSE1Q9NYZ3 720 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 DDHD2O94830 711 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 AXLP30530 894 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 NME5P56597 212 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 ZBTB17Q13105 803 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 DENND6AQ8IWF6 608 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 AGGF1Q8N302 714 aaeCLIP14.06□□□□□ -0.166e-7■■□□□ 12.6
CCDC88A-211ENST00000471947 LINC01465Q8N7H1 131 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 NOD2Q9HC29 1040 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 SLC24A2Q9UI40 661 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 FZD10Q9ULW2 581 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 FARP1Q9Y4F1 1045 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 ASMTLO95671 621 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 FKBP1BP68106 108 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 MTFR1Q15390 333 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 PDCD2Q16342 344 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 ANO4Q32M45 955 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 MYLK4Q86YV6 388 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 DCAKDQ8WVC6 231 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 PHF21BQ96EK2 531 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 ELMO2Q96JJ3 720 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 CLPTM1LQ96KA5 538 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 THTPAQ9BU02 230 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 MTMR10Q9NXD2 777 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 PCDHB7Q9Y5E2 793 aa14.06□□□□□ -0.16
CCDC88A-211ENST00000471947 B2RBV5 119 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 ENTPD5O75356 428 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 PDHA1P08559 390 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 UBAP2LQ14157 1087 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 CYP4V2Q6ZWL3 525 aaPredicted RBP14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 ZNF467Q7Z7K2 595 aaPredicted RBP14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 C14orf80Q86SX3 495 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 CAPNS2Q96L46 248 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 FTHL17Q9BXU8 183 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 RNF208Q9H0X6 261 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 IRF9Q00978 393 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 ZBTB6Q15916 424 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 GSTCDQ8NEC7 633 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 STMN2Q93045 179 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 NMUR1Q9HB89 426 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 ATP11BQ9Y2G3 1177 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 NMBRP28336 390 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 ACLYP53396 1101 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 NCALDP61601 193 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 NSUN2Q08J23 767 aaKnown RBP eCLIP14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 ACAP1Q15027 740 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 SMC1BQ8NDV3 1235 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 ZCWPW1Q9H0M4 648 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 TMEM51Q9NW97 253 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 CHKBQ9Y259 395 aa14.05□□□□□ -0.16
CCDC88A-211ENST00000471947 MBLAC1A4D2B0 266 aaPredicted RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms