RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 ADPGKQ9BRR6 497 aa6.8□□□□□ -1.32
PTCD3-208ENST00000469585 MRI1Q9BV20 369 aa6.8□□□□□ -1.32
PTCD3-208ENST00000469585 TIPINQ9BVW5 301 aa6.8□□□□□ -1.32
PTCD3-208ENST00000469585 CPEB1Q9BZB8 566 aaKnown RBP6.8□□□□□ -1.32
PTCD3-208ENST00000469585 TRIM6Q9C030 488 aaPredicted RBP6.8□□□□□ -1.32
PTCD3-208ENST00000469585 C2orf40Q9H1Z8 148 aa6.8□□□□□ -1.32
PTCD3-208ENST00000469585 KCND2Q9NZV8 630 aa6.8□□□□□ -1.32
PTCD3-208ENST00000469585 SUCLA2Q9P2R7 463 aaPredicted RBP6.8□□□□□ -1.32
PTCD3-208ENST00000469585 RUVBL1Q9Y265 456 aaKnown RBP6.8□□□□□ -1.32
PTCD3-208ENST00000469585 PCDHA3Q9Y5H8 950 aa6.8□□□□□ -1.32
PTCD3-208ENST00000469585 DOCK5Q9H7D0 1870 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 LRRIQ4A6NIV6 560 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 NT5C1B-RDH14C9J2C7 533 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 USO1O60763 962 aaKnown RBP6.79□□□□□ -1.32
PTCD3-208ENST00000469585 TBCAO75347 108 aaKnown RBP6.79□□□□□ -1.32
PTCD3-208ENST00000469585 IPO13O94829 963 aaKnown RBP6.79□□□□□ -1.32
PTCD3-208ENST00000469585 LYPLA2O95372 231 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 C22orf31O95567 290 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 VTNP04004 478 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 SCP2P22307 547 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 HOXC8P31273 242 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 ME1P48163 572 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 CLCN3P51790 818 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 TBX4P57082 545 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 CLRN1P58418 232 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 NLRP11P59045 1033 aaKnown RBP6.79□□□□□ -1.32
PTCD3-208ENST00000469585 NKX6-1P78426 367 aaPredicted RBP6.79□□□□□ -1.32
PTCD3-208ENST00000469585 CEBPZQ03701 1054 aaKnown RBP6.79□□□□□ -1.32
PTCD3-208ENST00000469585 ST3GAL1Q11201 340 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 DMP1Q13316 513 aaPredicted RBP6.79□□□□□ -1.32
PTCD3-208ENST00000469585 GALEQ14376 348 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 TWF2Q6IBS0 349 aaKnown RBP6.79□□□□□ -1.32
PTCD3-208ENST00000469585 CCDC73Q6ZRK6 1079 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 STXBP4Q6ZWJ1 553 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 CHST15Q7LFX5 561 aaPredicted RBP6.79□□□□□ -1.32
PTCD3-208ENST00000469585 CATSPER4Q7RTX7 472 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 LRRC71Q8N4P6 559 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 SLC17A8Q8NDX2 589 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 OR52N2Q8NGI0 321 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 DEPTORQ8TB45 409 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 TRAPPC12Q8WVT3 735 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 HAS1Q92839 578 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 GJA10Q969M2 543 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 PPP2R3CQ969Q6 453 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 CCDC47Q96A33 483 aaKnown RBP6.79□□□□□ -1.32
PTCD3-208ENST00000469585 MIEF2Q96C03 454 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 TIFAQ96CG3 184 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 MTMR9Q96QG7 549 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 PCYT2Q99447 389 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 CPPED1Q9BRF8 314 aaPredicted RBP6.79□□□□□ -1.32
PTCD3-208ENST00000469585 C11orf54Q9H0W9 315 aaPredicted RBP6.79□□□□□ -1.32
PTCD3-208ENST00000469585 TMEM60Q9H2L4 133 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 DDX19AQ9NUU7 478 aaKnown RBP6.79□□□□□ -1.32
PTCD3-208ENST00000469585 RGL1Q9NZL6 768 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 FAM30AQ9NZY2 134 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 STXBP5LQ9Y2K9 1186 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 INSL6Q9Y581 213 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 PCDHB7Q9Y5E2 793 aa6.79□□□□□ -1.32
PTCD3-208ENST00000469585 UMODL1Q5DID0 1318 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 SPTLC2O15270 562 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 LPXNO60711 386 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 MFAP3LO75121 409 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 CXCL10P02778 98 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 HTR1BP28222 390 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 AXLP30530 894 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 MATR3P43243 847 aaKnown RBP eCLIP6.78□□□□□ -1.32
PTCD3-208ENST00000469585 AGFG1P52594 562 aaKnown RBP6.78□□□□□ -1.32
PTCD3-208ENST00000469585 EFNA5P52803 228 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 UGCGQ16739 394 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 EARS2Q5JPH6 523 aaKnown RBP6.78□□□□□ -1.32
PTCD3-208ENST00000469585 C1QL3Q5VWW1 255 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 RRAGBQ5VZM2 374 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 PLA2G4FQ68DD2 849 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 SRGAP1Q7Z6B7 1085 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 ZNF808Q8N4W9 903 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-208ENST00000469585 RNF149Q8NC42 400 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 DBF4BQ8NFT6 615 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 PGBD4Q96DM1 585 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 RAD9AQ99638 391 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 NDC1Q9BTX1 674 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 KRTAP9-9Q9BYP9 154 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 KRTAP9-4Q9BYQ2 154 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 SCAND2PQ9GZW5 306 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-208ENST00000469585 BHMT2Q9H2M3 363 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 ZHX3Q9H4I2 956 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 C17orf75Q9HAS0 396 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 MAN1C1Q9NR34 630 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 CHST12Q9NRB3 414 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 LARSQ9P2J5 1176 aaKnown RBP6.78□□□□□ -1.32
PTCD3-208ENST00000469585 HOOK1Q9UJC3 728 aaKnown RBP6.78□□□□□ -1.32
PTCD3-208ENST00000469585 CNOT11Q9UKZ1 510 aaKnown RBP6.78□□□□□ -1.32
PTCD3-208ENST00000469585 PIN4Q9Y237 131 aaKnown RBP6.78□□□□□ -1.32
PTCD3-208ENST00000469585 ALPK3Q96L96 1907 aa6.78□□□□□ -1.32
PTCD3-208ENST00000469585 A0A088AWK7 358 aa6.77□□□□□ -1.33
PTCD3-208ENST00000469585 CCDC169A6NNP5 214 aa6.77□□□□□ -1.33
PTCD3-208ENST00000469585 INO80B-WBP1J3KQ70 363 aa6.77□□□□□ -1.33
PTCD3-208ENST00000469585 F2RL2O00254 374 aa6.77□□□□□ -1.33
PTCD3-208ENST00000469585 ADAMTS3O15072 1205 aa6.77□□□□□ -1.33
PTCD3-208ENST00000469585 SLITRK3O94933 977 aa6.77□□□□□ -1.33
PTCD3-208ENST00000469585 YEATS4O95619 227 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms