RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 PIWIL2Q8TC59 973 aaKnown RBP11.9□□□□□ -0.5
NPHP4-204ENST00000460696 CERS2Q96G23 380 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 KCNK16Q96T55 309 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 EFHD1Q9BUP0 239 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 ADAM7Q9H2U9 754 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 UGT1A7Q9HAW7 530 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 UGT1A10Q9HAW8 530 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 UGT1A8Q9HAW9 530 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 SPATS2LQ9NUQ6 558 aaKnown RBP11.9□□□□□ -0.5
NPHP4-204ENST00000460696 ACOT9Q9Y305 439 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 MYO18AQ92614 2054 aaKnown RBP11.9□□□□□ -0.5
NPHP4-204ENST00000460696 HACD1B0YJ81 288 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 MFSD11O43934 449 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 TCEA3O75764 348 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 PPM1FP49593 454 aaPredicted RBP11.9□□□□□ -0.5
NPHP4-204ENST00000460696 EFEMP1Q12805 493 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 EMC10Q5UCC4 262 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 SCARA3Q6AZY7 606 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 KRT80Q6KB66 452 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 ST13P4Q8IZP2 240 aaPredicted RBP11.9□□□□□ -0.5
NPHP4-204ENST00000460696 RNF148Q8N7C7 305 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 KCTD15Q96SI1 283 aaPredicted RBP11.9□□□□□ -0.5
NPHP4-204ENST00000460696 NMUR2Q9GZQ4 415 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 TRPV6Q9H1D0 765 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 SYBUQ9NX95 663 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 ARHGAP26Q9UNA1 814 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 AAR2Q9Y312 384 aaKnown RBP11.9□□□□□ -0.5
NPHP4-204ENST00000460696 IPPQ9Y573 584 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 GOLGA8CPA6NN73 597 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 LGR5O75473 907 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 ZCCHC18P0CG32 403 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 STMN1P16949 149 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 NFKB1P19838 968 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 ZNF252P-AS1Q0IIN9 211 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 RBBP5Q15291 538 aaKnown RBP11.9□□□□□ -0.5
NPHP4-204ENST00000460696 PDPK2PQ6A1A2 396 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 TAF2Q6P1X5 1199 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 DEFB107AQ8IZN7 70 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 ICA1LQ8NDH6 482 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 FAM13CQ8NE31 585 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 BLOC1S5Q8TDH9 187 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 TEKT4Q8WW24 435 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 UPF3AQ9H1J1 476 aaKnown RBP11.9□□□□□ -0.5
NPHP4-204ENST00000460696 NT5MQ9NPB1 228 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 ACSS2Q9NR19 701 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 MAN1C1Q9NR34 630 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 PACSIN3Q9UKS6 424 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 NRAPQ86VF7 1730 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 NCAM2O15394 837 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 ITGA2BP08514 1039 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 CDH17Q12864 832 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 CSHL1Q14406 222 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 RAB6CQ53S08 254 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 WASHC2DQ5SRD0 308 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 SLC26A9Q7LBE3 791 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 PSTKQ8IV42 348 aaKnown RBP11.89□□□□□ -0.51
NPHP4-204ENST00000460696 EFHBQ8N7U6 833 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 SMARCD1Q96GM5 515 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 PEBP4Q96S96 227 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 RAB6CQ9H0N0 254 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 RNF39Q9H2S5 420 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 CDYLQ9Y232 598 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 PCDHA11Q9Y5I1 949 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 THSD7AQ9UPZ6 1657 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 CLUHO75153 1309 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 TYW5A2RUC4 315 aaKnown RBP11.89□□□□□ -0.51
NPHP4-204ENST00000460696 TRIM13O60858 407 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 ZMPSTE24O75844 475 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 PROCP04070 461 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 TSHRP16473 764 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 ZNF132P52740 706 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 SLC25A52Q3SY17 297 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 TCHHL1Q5QJ38 904 aaPredicted RBP11.89□□□□□ -0.51
NPHP4-204ENST00000460696 DUSP16Q9BY84 665 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 CCDC134Q9H6E4 229 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 SUDS3Q9H7L9 328 aaPredicted RBP11.89□□□□□ -0.51
NPHP4-204ENST00000460696 KCNK4Q9NYG8 393 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 LAMB2P55268 1798 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 NHSQ6T4R5 1651 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 KRT36O76013 467 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 SUPT7LO94864 414 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 TUBP50607 506 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 PLK1P53350 603 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 SLC25A3Q00325 362 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 UBAP2LQ14157 1087 aaKnown RBP11.89□□□□□ -0.51
NPHP4-204ENST00000460696 MAPRE1Q15691 268 aaKnown RBP11.89□□□□□ -0.51
NPHP4-204ENST00000460696 SOWAHAQ2M3V2 549 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 SEL1L3Q68CR1 1132 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 KYAT3Q6YP21 454 aaKnown RBP11.89□□□□□ -0.51
NPHP4-204ENST00000460696 PTAR1Q7Z6K3 402 aaPredicted RBP11.89□□□□□ -0.51
NPHP4-204ENST00000460696 TTC7BQ86TV6 843 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 IFNEQ86WN2 208 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 UNC5BQ8IZJ1 945 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 TDRD5Q8NAT2 981 aaKnown RBP11.89□□□□□ -0.51
NPHP4-204ENST00000460696 BHMTQ93088 406 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 ZNF512Q96ME7 567 aaPredicted RBP11.89□□□□□ -0.51
NPHP4-204ENST00000460696 ST3GAL5Q9UNP4 418 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 PLLPQ9Y342 182 aa11.89□□□□□ -0.51
NPHP4-204ENST00000460696 CCL5P13501 91 aa11.88□□□□□ -0.51
NPHP4-204ENST00000460696 CCR1P32246 355 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms