RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 VDRP11473 427 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 HADHBP55084 474 aaKnown RBP6.34□□□□□ -1.39
VPS13D-202ENST00000460333 DPYSQ14117 519 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 FAM187BQ17R55 369 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 ATAD3BQ5T9A4 648 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 NECAB2Q7Z6G3 386 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 ARPINQ7Z6K5 226 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 ARL10Q8N8L6 244 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 ST13P5Q8NFI4 369 aaPredicted RBP6.34□□□□□ -1.39
VPS13D-202ENST00000460333 DQX1Q8TE96 717 aaKnown RBP6.34□□□□□ -1.39
VPS13D-202ENST00000460333 SEMA4DQ92854 862 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 TNIP3Q96KP6 325 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 PCYT2Q99447 389 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 NOL6Q9H6R4 1146 aaKnown RBP6.34□□□□□ -1.39
VPS13D-202ENST00000460333 VPS45Q9NRW7 570 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 VTI1BQ9UEU0 232 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 CNTNAP2Q9UHC6 1331 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 DERAQ9Y315 318 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 Q9Y3F1 56 aa6.34□□□□□ -1.39
VPS13D-202ENST00000460333 NEMP1O14524 444 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 GSC2O15499 205 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 STBD1O95210 358 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 C22orf31O95567 290 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 ASS1P00966 412 aaKnown RBP6.33□□□□□ -1.4
VPS13D-202ENST00000460333 FASP25445 335 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 SV2CQ496J9 727 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 TMEM110Q86TL2 294 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 FBXO36Q8NEA4 188 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 TCP10LQ8TDR4 215 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 RMDN1Q96DB5 314 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 TSPAN17Q96FV3 270 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 KREMEN1Q96MU8 473 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 MED10Q9BTT4 135 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 OSGEPQ9NPF4 335 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 SELENONQ9NZV5 590 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 FAM8A1Q9UBU6 413 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 CPSF3Q9UKF6 684 aaKnown RBP6.33□□□□□ -1.4
VPS13D-202ENST00000460333 PRPF19Q9UMS4 504 aaKnown RBP6.33□□□□□ -1.4
VPS13D-202ENST00000460333 POLIQ9UNA4 740 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 PCDHA3Q9Y5H8 950 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 SSC5DA1L4H1 1573 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 PGM3O95394 542 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 EIF4BP23588 611 aaKnown RBP6.33□□□□□ -1.4
VPS13D-202ENST00000460333 CLCN2P51788 898 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 FMO1Q01740 532 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 EPS8Q12929 822 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 FSCN1Q16658 493 aaKnown RBP6.33□□□□□ -1.4
VPS13D-202ENST00000460333 KIZQ2M2Z5 673 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 EMC10Q5UCC4 262 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 TAS2R42Q7RTR8 314 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 CAPSLQ8WWF8 208 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 KAT5Q92993 513 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 BHMTQ93088 406 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 ZNF570Q96NI8 536 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 PLEKHG4BQ96PX9 1271 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 MAGEB5Q9BZ81 275 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 RNPEPQ9H4A4 650 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 CYLDQ9NQC7 956 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 TMEM39AQ9NV64 488 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 KLHL8Q9P2G9 620 aaPredicted RBP6.33□□□□□ -1.4
VPS13D-202ENST00000460333 RBM47A0AV96 593 aaKnown RBP6.33□□□□□ -1.4
VPS13D-202ENST00000460333 TYW5A2RUC4 315 aaKnown RBP6.33□□□□□ -1.4
VPS13D-202ENST00000460333 PDZK1P1A8MUH7 402 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 LACTBL1A8MY62 500 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 CLOCKO15516 846 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 PRPF4O43172 522 aaKnown RBP eCLIP6.33□□□□□ -1.4
VPS13D-202ENST00000460333 SMIM10L2AP0DMW4 78 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 SMIM10L2BP0DMW5 78 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 ETS2P15036 469 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 MBTD1Q05BQ5 628 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 TRAF2Q12933 501 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 SLC39A4Q6P5W5 647 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 ULK2Q8IYT8 1036 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 BBS5Q8N3I7 341 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 DCLK2Q8N568 766 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 RASSF5Q8WWW0 418 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 ZNF606Q8WXB4 792 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 KCNN1Q92952 543 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 CPB2Q96IY4 423 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 CEP44Q9C0F1 390 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 COG4Q9H9E3 785 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 CLK4Q9HAZ1 481 aaKnown RBP6.33□□□□□ -1.4
VPS13D-202ENST00000460333 S100A14Q9HCY8 104 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 RAB6BQ9NRW1 208 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 SLC12A6Q9UHW9 1150 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 LNPEPQ9UIQ6 1025 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 FAM50BQ9Y247 325 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 GPC6Q9Y625 555 aaPredicted RBP6.33□□□□□ -1.4
VPS13D-202ENST00000460333 IGKV6-21A0A0C4DH24 114 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 TRIM43BA6NCK2 446 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 PDE9AO76083 593 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 CCNB1P14635 433 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 SMPD1P17405 629 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 GRM5P41594 1212 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 HK2P52789 917 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 TSPY1Q01534 308 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 NAB1Q13506 487 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 FASTKD1Q53R41 847 aaKnown RBP6.33□□□□□ -1.4
VPS13D-202ENST00000460333 CEP78Q5JTW2 689 aa6.33□□□□□ -1.4
VPS13D-202ENST00000460333 SEL1L3Q68CR1 1132 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms