RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ALLCQ8N6M5 410 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 HJURPQ8NCD3 748 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ZNF473Q8WTR7 871 aaKnown RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 NCLNQ969V3 563 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 Q9H521 79 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 MPP6Q9NZW5 540 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ZNF212Q9UDV6 495 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ADGRA2Q96PE1 1338 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 KPNA3O00505 521 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 MDM4O15151 490 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 PPFIA2O75334 1257 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 VAPBO95292 243 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 CYP1A1P04798 512 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ITGAVP06756 1048 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 PTPN7P35236 360 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 RPL22P35268 128 aaKnown RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 DNAJC3Q13217 504 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 TRIM68Q6AZZ1 485 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 APTXQ7Z2E3 356 aaKnown RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ZCCHC9Q8N567 271 aaKnown RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 FNIP1Q8TF40 1166 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 LRRN4Q8WUT4 740 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 LGMNQ99538 433 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 WWOXQ9NZC7 414 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 AJAP1Q9UKB5 411 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 RNF112Q9ULX5 631 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 COG5Q9UP83 839 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ACOT9Q9Y305 439 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 USP15Q9Y4E8 981 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ERI2A8K979 691 aaKnown RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 RPL17P18621 184 aaKnown RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 VEGFBP49765 207 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 HNRNPH2P55795 449 aaKnown RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 POU4F1Q01851 419 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 MAPRE2Q15555 327 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 SPANXN3Q5MJ09 141 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 PRSS55Q6UWB4 352 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 LRRC49Q8IUZ0 686 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 TEKT4Q8WW24 435 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 PAWRQ96IZ0 340 aaKnown RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 MS4A4AQ96JQ5 239 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 CDHR5Q9HBB8 845 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 GPAMQ9HCL2 828 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ADA2Q9NZK5 511 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 SLC13A4Q9UKG4 626 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 TELO2Q9Y4R8 837 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 CHADO15335 359 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 LRCH4O75427 683 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ZNF865P0CJ78 1059 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 PYGBP11216 843 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 CD151P48509 253 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 NDUFV1P49821 464 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 SEC24CP53992 1094 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 MTFR1Q15390 333 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 PRUNE1Q86TP1 453 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 NETO2Q8NC67 525 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 IRGQQ8WZA9 623 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 EMID1Q96A84 441 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 KCNK16Q96T55 309 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 CYLDQ9NQC7 956 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 CNTN3Q9P232 1028 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 NRP1O14786 923 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 CCL16O15467 120 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 SUPT7LO94864 414 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 NFKB1P19838 968 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 SERPINA4P29622 427 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 PBLDP30039 288 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-213ENST00000448038 GP5P40197 560 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 PBX3P40426 434 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 CD86P42081 329 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 CDK16Q00536 496 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 CAPRIN1Q14444 709 aaKnown RBP7.56□□□□□ -1.2
SYNE1-213ENST00000448038 DSG4Q86SJ6 1040 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 CACUL1Q86Y37 369 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 FBXO22Q8NEZ5 403 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 STK32AQ8WU08 396 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 CRYGNQ8WXF5 182 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 SUSD6Q92537 303 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 TRIM15Q9C019 465 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 CERS4Q9HA82 394 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 SYTL2Q9HCH5 934 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 STK39Q9UEW8 545 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 USH1CQ9Y6N9 552 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 DNAJC25-GNG10A0A024R161 153 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 SERPINH1P50454 418 aaKnown RBP7.56□□□□□ -1.2
SYNE1-213ENST00000448038 PHEXP78562 749 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 CSHL1Q14406 222 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 GPR158Q5T848 1215 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 ARHGAP17Q68EM7 881 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 ZNF470Q6ECI4 717 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 TDRD5Q8NAT2 981 aaKnown RBP7.56□□□□□ -1.2
SYNE1-213ENST00000448038 OR52K1Q8NGK4 314 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 DQX1Q8TE96 717 aaKnown RBP7.56□□□□□ -1.2
SYNE1-213ENST00000448038 TM6SF2Q9BZW4 377 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 HMGXB4Q9UGU5 601 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 PCDHGB4Q9UN71 923 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-213ENST00000448038 CAPN15O75808 1086 aa7.56□□□□□ -1.2
SYNE1-213ENST00000448038 POLR2LP62875 67 aaKnown RBP7.56□□□□□ -1.2
SYNE1-213ENST00000448038 DMTNQ08495 405 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms