RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TBX18O95935 607 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 TK1P04183 234 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 IL6RP08887 468 aaPredicted RBP4.6□□□□□ -1.67
VPS29-202ENST00000447578 HOXB6P17509 224 aaKnown RBP4.6□□□□□ -1.67
VPS29-202ENST00000447578 ENGP17813 658 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 SLC5A2P31639 672 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 CCT4P50991 539 aaKnown RBP4.6□□□□□ -1.67
VPS29-202ENST00000447578 DGKEP52429 567 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 ZNF134P52741 427 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 CYP4F2P78329 520 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 GPS1Q13098 491 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 ATP1A4Q13733 1029 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 GRM4Q14833 912 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 BTBD16Q32M84 506 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 ZIK1Q3SY52 487 aaPredicted RBP4.6□□□□□ -1.67
VPS29-202ENST00000447578 AWAT2Q6E213 333 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 ITPRIPL1Q6GPH6 555 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 NFRKBQ6P4R8 1299 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 DTX2Q86UW9 622 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 CHSY1Q86X52 802 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 TMTC2Q8N394 836 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 PNLDC1Q8NA58 520 aaKnown RBP4.6□□□□□ -1.67
VPS29-202ENST00000447578 CEP70Q8NHQ1 597 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 C5orf34Q96MH7 638 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 WACQ9BTA9 647 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 TWSG1Q9GZX9 223 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 VPS16Q9H269 839 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 PDGFCQ9NRA1 345 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 OLA1Q9NTK5 396 aaKnown RBP4.6□□□□□ -1.67
VPS29-202ENST00000447578 TMEM160Q9NX00 188 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 CLIC5Q9NZA1 410 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 DNAJB11Q9UBS4 358 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 AASSQ9UDR5 926 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 ARHGAP26Q9UNA1 814 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 MRPS17Q9Y2R5 130 aaKnown RBP4.6□□□□□ -1.67
VPS29-202ENST00000447578 SLC45A1Q9Y2W3 748 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 KNSTRNQ9Y448 316 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 RNF123Q5XPI4 1314 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 SCAF11Q99590 1463 aaKnown RBP4.6□□□□□ -1.67
VPS29-202ENST00000447578 INO80Q9ULG1 1556 aaPredicted RBP4.6□□□□□ -1.67
VPS29-202ENST00000447578 CLTCL1P53675 1640 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 MADDQ8WXG6 1647 aa4.6□□□□□ -1.67
VPS29-202ENST00000447578 OR2W5A6NFC9 320 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 EFCAB8A8MWE9 144 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 TET3O43151 1660 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 SRGAP2O75044 1071 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 PPP6R2O75170 966 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 ARP10275 920 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 KCNA3P22001 575 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 PRKAR1BP31321 381 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 CCR5P51681 352 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 RBM5P52756 815 aaKnown RBP eCLIP4.59□□□□□ -1.67
VPS29-202ENST00000447578 CASP6P55212 293 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 LOXL3P58215 753 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 MYO1EQ12965 1108 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 EIF3AQ14152 1382 aaKnown RBP4.59□□□□□ -1.67
VPS29-202ENST00000447578 RABEP1Q15276 862 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 PTCHD3Q3KNS1 767 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 GPATCH4Q5T3I0 446 aaKnown RBP4.59□□□□□ -1.67
VPS29-202ENST00000447578 TTLL5Q6EMB2 1281 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 ABLIM2Q6H8Q1 611 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 ZNF280DQ6N043 979 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 CNGA4Q8IV77 575 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 VWDEQ8N2E2 1590 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 C1orf131Q8NDD1 294 aaKnown RBP4.59□□□□□ -1.67
VPS29-202ENST00000447578 DNAJB14Q8TBM8 379 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 SNRNP27Q8WVK2 155 aaKnown RBP4.59□□□□□ -1.67
VPS29-202ENST00000447578 RFFLQ8WZ73 363 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 BARD1Q99728 777 aaKnown RBP4.59□□□□□ -1.67
VPS29-202ENST00000447578 ANP32EQ9BTT0 268 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 RNF17Q9BXT8 1623 aaKnown RBP4.59□□□□□ -1.67
VPS29-202ENST00000447578 KRTAP4-4Q9BYR3 166 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 GPR63Q9BZJ6 419 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 TRIM5Q9C035 493 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 PRSS22Q9GZN4 317 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 PAIP1Q9H074 479 aaKnown RBP4.59□□□□□ -1.67
VPS29-202ENST00000447578 GBA2Q9HCG7 927 aaPredicted RBP4.59□□□□□ -1.67
VPS29-202ENST00000447578 DUSP22Q9NRW4 184 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 SERTAD3Q9UJW9 196 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 C19orf53Q9UNZ5 99 aaPredicted RBP4.59□□□□□ -1.67
VPS29-202ENST00000447578 USP22Q9UPT9 525 aa4.59□□□□□ -1.67
VPS29-202ENST00000447578 RRP7AQ9Y3A4 280 aaKnown RBP4.59□□□□□ -1.67
VPS29-202ENST00000447578 DEPDC5O75140 1603 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 UGGT1Q9NYU2 1555 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 CD109Q6YHK3 1445 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 ADGRF5Q8IZF2 1346 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 ANKRD18BA2A2Z9 1011 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 GFPT2O94808 682 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 FESP07332 822 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 YY1P25490 414 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 PPP2R1AP30153 589 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 NR4A2P43354 598 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 MMP13P45452 471 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 RRP1P56182 461 aaKnown RBP4.58□□□□□ -1.68
VPS29-202ENST00000447578 PRKG2Q13237 762 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 E2F2Q14209 437 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 WDR43Q15061 677 aaKnown RBP eCLIP4.58□□□□□ -1.68
VPS29-202ENST00000447578 ANKRD1Q15327 319 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 SLC45A4Q5BKX6 768 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 TEDDM1Q5T9Z0 273 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms