RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 DHX40Q8IX18 779 aaKnown RBP21.43■■□□□ 1.02
SDC1-205ENST00000447124 CCAR2Q8N163 923 aaKnown RBP21.43■■□□□ 1.02
SDC1-205ENST00000447124 ZCCHC9Q8N567 271 aaKnown RBP21.43■■□□□ 1.02
SDC1-205ENST00000447124 KDM1BQ8NB78 822 aa21.43■■□□□ 1.02
SDC1-205ENST00000447124 RNF34Q969K3 372 aa21.43■■□□□ 1.02
SDC1-205ENST00000447124 ANLNQ9NQW6 1124 aa21.43■■□□□ 1.02
SDC1-205ENST00000447124 DNAAF2Q9NVR5 837 aaKnown RBP21.43■■□□□ 1.02
SDC1-205ENST00000447124 WASF3Q9UPY6 502 aa21.43■■□□□ 1.02
SDC1-205ENST00000447124 CACNA1BQ00975 2339 aa21.43■■□□□ 1.02
SDC1-205ENST00000447124 I6L893 689 aaPredicted RBP21.42■■□□□ 1.02
SDC1-205ENST00000447124 OPHN1O60890 802 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 DAB1O75553 588 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 DNTTP04053 509 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 SRPRAP08240 638 aaKnown RBP21.42■■□□□ 1.02
SDC1-205ENST00000447124 ABCB4P21439 1286 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 KLK7P49862 253 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 ST8SIA6P61647 398 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 FAM193AP78312 1265 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 ECT2LQ008S8 904 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 NME3Q13232 169 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 AUHQ13825 339 aaKnown RBP21.42■■□□□ 1.02
SDC1-205ENST00000447124 ARID5BQ14865 1188 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 TAF3Q5VWG9 929 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 ZNF776Q68DI1 518 aaPredicted RBP21.42■■□□□ 1.02
SDC1-205ENST00000447124 NOP9Q86U38 636 aaKnown RBP21.42■■□□□ 1.02
SDC1-205ENST00000447124 HDDC3Q8N4P3 179 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 TMEM35BQ8NCS4 154 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 OR52K2Q8NGK3 314 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 ALG14Q96F25 216 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 RPL10LQ96L21 214 aaKnown RBP21.42■■□□□ 1.02
SDC1-205ENST00000447124 FAM129BQ96TA1 746 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 NPY6RQ99463 290 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 STK33Q9BYT3 514 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 VPS16Q9H269 839 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 HS3ST4Q9Y661 456 aa21.42■■□□□ 1.02
SDC1-205ENST00000447124 M0QYT0 321 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 BCAT2O15382 392 aaPredicted RBP21.41■■□□□ 1.02
SDC1-205ENST00000447124 PDGFRAP16234 1089 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 GGCXP38435 758 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 MATKP42679 507 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 GABRB2P47870 512 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 PLK1P53350 603 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 SNX16P57768 344 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 RNASE9P60153 205 aaKnown RBP21.41■■□□□ 1.02
SDC1-205ENST00000447124 GRIK2Q13002 908 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 C2CD6Q53TS8 623 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 CDKAL1Q5VV42 579 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 CXorf57Q6NSI4 855 aaKnown RBP21.41■■□□□ 1.02
SDC1-205ENST00000447124 PTPRN2Q92932 1015 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 NT5C3BQ969T7 300 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 BTBD1Q9H0C5 482 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 PCED1AQ9H1Q7 454 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 GANQ9H2C0 597 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 SYNCQ9H7C4 482 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 PIGVQ9NUD9 493 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 CEP83Q9Y592 693 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 CABIN1Q9Y6J0 2220 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 CEP295Q9C0D2 2601 aa21.41■■□□□ 1.02
SDC1-205ENST00000447124 ITIH6Q6UXX5 1313 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 SPAARA0A1B0GVQ0 90 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 TARSL2A2RTX5 802 aaKnown RBP21.4■■□□□ 1.02
SDC1-205ENST00000447124 PAGE1O75459 146 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 MOCS3O95396 460 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 ADCY5O95622 1261 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 SEMA4FO95754 770 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 STK19P49842 368 aaPredicted RBP21.4■■□□□ 1.02
SDC1-205ENST00000447124 CENPCQ03188 943 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 KRT31Q15323 416 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 C5orf22Q49AR2 442 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 XYLT1Q86Y38 959 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 ZDHHC17Q8IUH5 632 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 C18orf8Q96DM3 657 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 PDCL3Q9H2J4 239 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 PABPC3Q9H361 631 aaKnown RBP21.4■■□□□ 1.02
SDC1-205ENST00000447124 SLC32A1Q9H598 525 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 IL21RQ9HBE5 538 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 FANCLQ9NW38 375 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.4■■□□□ 1.02
SDC1-205ENST00000447124 SERGEFQ9UGK8 458 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 VANGL2Q9ULK5 521 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 ZBTB32Q9Y2Y4 487 aaPredicted RBP21.4■■□□□ 1.02
SDC1-205ENST00000447124 SNX10Q9Y5X0 201 aa21.4■■□□□ 1.02
SDC1-205ENST00000447124 F8VZ95 297 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 MID1O15344 667 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 MMEP08473 750 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 VAV1P15498 845 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 SPINK2P20155 84 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 CXCR3P49682 368 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 FOXC1Q12948 553 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 SLC12A1Q13621 1099 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 RABGAP1LQ5R372 815 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 ARTNQ5T4W7 220 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 TRNP1Q6NT89 227 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 ERICH1Q86X53 443 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 MMAAQ8IVH4 418 aaKnown RBP21.39■■□□□ 1.01
SDC1-205ENST00000447124 BIRC7Q96CA5 298 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 CAMK1GQ96NX5 476 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 RPRD1AQ96P16 312 aaPredicted RBP21.39■■□□□ 1.01
SDC1-205ENST00000447124 ORAI3Q9BRQ5 295 aa21.39■■□□□ 1.01
SDC1-205ENST00000447124 SGK2Q9HBY8 427 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms