RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 PCDH15Q96QU1 1955 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 CDX4O14627 284 aaPredicted RBP20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 SRPRAP08240 638 aaKnown RBP20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 MAOBP27338 520 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 CDH5P33151 784 aaPredicted RBP20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 NUMBP49757 651 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 KLK7P49862 253 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 OXCT1P55809 520 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 ECT2LQ008S8 904 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 CENPCQ03188 943 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 ZBTB16Q05516 673 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 SH3PXD2AQ5TCZ1 1133 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 NAA35Q5VZE5 725 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 DPY19L2P1Q6NXN4 242 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 DHX40Q8IX18 779 aaKnown RBP20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 CCAR2Q8N163 923 aaKnown RBP20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 EPS8L1Q8TE68 723 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 PPP1R9BQ96SB3 815 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 SIK2Q9H0K1 926 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 GANQ9H2C0 597 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 INTS6Q9UL03 887 aaKnown RBP20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 NCKAP1Q9Y2A7 1128 aa20.49■□□□□ 0.87
SHROOM1-204ENST00000440118 TPRP12270 2363 aaKnown RBP20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 TM4SF5O14894 197 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 OPHN1O60890 802 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 IGLV3-19P01714 112 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 MMEP08473 750 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 GGCXP38435 758 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 COPB1P53618 953 aaKnown RBP20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 RPS14P62263 151 aaKnown RBP20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 DEUP1Q05D60 604 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 SFSWAPQ12872 951 aaKnown RBP20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 SLC12A1Q13621 1099 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 AUHQ13825 339 aaKnown RBP20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 SYCP1Q15431 976 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 HNRNPA1L2Q32P51 320 aaKnown RBP20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 FBXL22Q6P050 247 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 NEK11Q8NG66 645 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 LMLNQ96KR4 655 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 BTBD1Q9H0C5 482 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 MTG2Q9H4K7 406 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 SLC32A1Q9H598 525 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 WDCPQ9H6R7 721 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 CAPN10Q9HC96 672 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 DAAM1Q9Y4D1 1078 aa20.48■□□□□ 0.87
SHROOM1-204ENST00000440118 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 EDDM13A0A1B0GTR0 161 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 A0A1B0GTW7 788 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 ARHGAP33O14559 1287 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 SIN3BO75182 1162 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 PAGE1O75459 146 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 SOX5P35711 763 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 CTSOP43234 321 aaPredicted RBP20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 UBXN1Q04323 297 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 SULT2A1Q06520 285 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 ZNF177Q13360 481 aaPredicted RBP20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 C2CD6Q53TS8 623 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 BRMS1LQ5PSV4 323 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 N4BP2L1Q5TBK1 243 aaPredicted RBP20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 ZNF677Q86XU0 584 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 XYLT1Q86Y38 959 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 APCDD1Q8J025 514 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 MINDY1Q8N5J2 469 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 CPA5Q8WXQ8 436 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 RPL10LQ96L21 214 aaKnown RBP20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 PRMT1Q99873 361 aaKnown RBP20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 NAT10Q9H0A0 1025 aaKnown RBP20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 TKTL2Q9H0I9 626 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 PIGVQ9NUD9 493 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 SLC25A13Q9UJS0 675 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 HS3ST4Q9Y661 456 aa20.47■□□□□ 0.87
SHROOM1-204ENST00000440118 LGALS16A8MUM7 142 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 SEMA4FO95754 770 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 F9P00740 461 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 SCNN1AP37088 669 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 STAT1P42224 750 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 NOMO3P69849 1222 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 ZNF252P-AS1Q0IIN9 211 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 EIF4EBP2Q13542 120 aaPredicted RBP20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 KDM1BQ8NB78 822 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 DEFB124Q8NES8 71 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 SLC20A1Q8WUM9 679 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 MRGPRX3Q96LB0 322 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 NPY6RQ99463 290 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 MUC3BQ9H195 1237 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 PCED1AQ9H1Q7 454 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 RSPH9Q9H1X1 276 aaPredicted RBP20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 SEPT11Q9NVA2 429 aaKnown RBP20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 EIF2B4Q9UI10 523 aaKnown RBP20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 VPS28Q9UK41 221 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 SCML1Q9UN30 329 aa20.46■□□□□ 0.87
SHROOM1-204ENST00000440118 ACACBO00763 2458 aa20.45■□□□□ 0.86
SHROOM1-204ENST00000440118 FAM47DPA6NHR8 397 aa20.45■□□□□ 0.86
SHROOM1-204ENST00000440118 METTL12A8MUP2 240 aa20.45■□□□□ 0.86
SHROOM1-204ENST00000440118 TTC34A8MYJ7 566 aa20.45■□□□□ 0.86
SHROOM1-204ENST00000440118 BCAT2O15382 392 aaPredicted RBP20.45■□□□□ 0.86
SHROOM1-204ENST00000440118 ZNF18P17022 549 aa20.45■□□□□ 0.86
SHROOM1-204ENST00000440118 ACSL1P33121 698 aa20.45■□□□□ 0.86
SHROOM1-204ENST00000440118 GABRB2P47870 512 aa20.45■□□□□ 0.86
SHROOM1-204ENST00000440118 PSMD8P48556 350 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms