RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 BCCIPQ9P287 314 aaKnown RBP eCLIP12.62□□□□□ -0.39
PTPRF-208ENST00000437607 TJP2Q9UDY2 1190 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 ANAPC7Q9UJX3 599 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 LOC400499M0QZD8 3231 aa12.62□□□□□ -0.39
PTPRF-208ENST00000437607 A0A1W2PQF6 199 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 MAP3K13O43283 966 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 ZNF500O60304 480 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-208ENST00000437607 SCNN1AP37088 669 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 TKTL1P51854 596 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 LMAN2Q12907 356 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 PLEKHA7Q6IQ23 1121 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 KIAA1211LQ6NV74 962 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 OLFML1Q6UWY5 402 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 PHLDB2Q86SQ0 1253 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 TMEM110Q86TL2 294 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 SYCE1Q8N0S2 351 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 PGBD3Q8N328 593 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 DEFB119Q8N690 84 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 ZNF513Q8N8E2 541 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-208ENST00000437607 TERB1Q8NA31 727 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 SLC35G2Q8TBE7 412 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 GOLGA1Q92805 767 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 FAM149B1Q96BN6 582 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 ACOX2Q99424 681 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 NUSAP1Q9BXS6 441 aaKnown RBP12.61□□□□□ -0.39
PTPRF-208ENST00000437607 ULBP1Q9BZM6 244 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 UBXN6Q9BZV1 441 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 OSGEPQ9NPF4 335 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 CNGB3Q9NQW8 809 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 SPHK2Q9NRA0 654 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 LCMT1Q9UIC8 334 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 SH3BP1Q9Y3L3 701 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 PAXBP1Q9Y5B6 917 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 CAPN6Q9Y6Q1 641 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 KNL1Q8NG31 2342 aa12.61□□□□□ -0.39
PTPRF-208ENST00000437607 CELSR3Q9NYQ7 3312 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 NYNRINQ9P2P1 1898 aaKnown RBP12.6□□□□□ -0.39
PTPRF-208ENST00000437607 TBC1D3BA6NDS4 549 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 HHLA1C9JL84 531 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 PAPSS1O43252 624 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-208ENST00000437607 MTA2O94776 668 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 IRF1P10914 325 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 KRT3P12035 628 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 WASP42768 502 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 RPL34P49207 117 aaKnown RBP12.6□□□□□ -0.39
PTPRF-208ENST00000437607 TUBP50607 506 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 HADHBP55084 474 aaKnown RBP12.6□□□□□ -0.39
PTPRF-208ENST00000437607 GNG11P61952 73 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 SEMA3BQ13214 749 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 MAMLD1Q13495 774 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 TCEAL1Q15170 157 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 ZNF569Q5MCW4 686 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 LYSMD4Q5XG99 296 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 EGFLAMQ63HQ2 1017 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 C11orf63Q6NUN7 778 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 SLC26A9Q7LBE3 791 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 GPRIN1Q7Z2K8 1008 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 TPCN2Q8NHX9 752 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 KCNV2Q8TDN2 545 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 P2RY11Q96G91 374 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 TRIM62Q9BVG3 475 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 CAPN10Q9HC96 672 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 CD93Q9NPY3 652 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 CALCOCO1Q9P1Z2 691 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 DEC1Q9P2X7 70 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 STARD13Q9Y3M8 1113 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 DUSP10Q9Y6W6 482 aa12.6□□□□□ -0.39
PTPRF-208ENST00000437607 MUC22E2RYF6 1773 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-208ENST00000437607 IGHV1OR15-9A0A0B4J2B8 117 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 SPAARA0A1B0GVQ0 90 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 TMEM110-MUSTN1A8MSY1 372 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 UPK3BL1B0FP48 263 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 UPK3BL2E5RIL1 263 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 HYAL3O43820 417 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-208ENST00000437607 TLR5O60602 858 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 HSF2BPO75031 334 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 DAB1O75553 588 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 GJB6O95452 261 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 TBX18O95935 607 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 ZBED1O96006 694 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 TUBB4AP04350 444 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 HOXB3P14651 431 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-208ENST00000437607 HOXB2P14652 356 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 NTSR1P30989 418 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 DAOAP59103 153 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 FAM193AP78312 1265 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 SLC6A3Q01959 620 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 RPL6Q02878 288 aaKnown RBP12.59□□□□□ -0.39
PTPRF-208ENST00000437607 BYSLQ13895 437 aaKnown RBP12.59□□□□□ -0.39
PTPRF-208ENST00000437607 ANO4Q32M45 955 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 RAB41Q5JT25 222 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 EFHC1Q5JVL4 640 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 NYAP1Q6ZVC0 841 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 HTR3DQ70Z44 454 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 DAAM2Q86T65 1068 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 SLC41A1Q8IVJ1 513 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 SLC35F6Q8N357 371 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 OR2I1PQ8NGU4 316 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 PIWIL1Q96J94 861 aaKnown RBP12.59□□□□□ -0.39
PTPRF-208ENST00000437607 KLF16Q9BXK1 252 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms