RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 AGAP2Q99490 1192 aa9.73□□□□□ -0.85
CUX1-206ENST00000437600 SYT15Q9BQS2 421 aa9.73□□□□□ -0.85
CUX1-206ENST00000437600 EBF4Q9BQW3 602 aa9.73□□□□□ -0.85
CUX1-206ENST00000437600 C11orf84Q9BUA3 381 aaPredicted RBP9.73□□□□□ -0.85
CUX1-206ENST00000437600 DUSP16Q9BY84 665 aa9.73□□□□□ -0.85
CUX1-206ENST00000437600 CAB39LQ9H9S4 337 aa9.73□□□□□ -0.85
CUX1-206ENST00000437600 CYLDQ9NQC7 956 aa9.73□□□□□ -0.85
CUX1-206ENST00000437600 MYO9BQ13459 2157 aa9.73□□□□□ -0.85
CUX1-206ENST00000437600 ARVCFO00192 962 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 ITM2AO43736 263 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 KRT37O76014 449 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 NPR3P17342 541 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 ERCC2P18074 760 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 BDNFP23560 247 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 PBX3P40426 434 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 RPL10AP62906 217 aaKnown RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 NKX3-2P78367 333 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 KDSRQ06136 332 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 STILQ15468 1287 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 SLC25A52Q3SY17 297 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 FYB2Q5VWT5 728 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 NUDCD3Q8IVD9 361 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 ZNF567Q8N184 647 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 TTC39CQ8N584 583 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 SHKBP1Q8TBC3 707 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 CENPIQ92674 756 aaPredicted RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 APOPT1Q96IL0 206 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 PAWRQ96IZ0 340 aaKnown RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 B3GALT6Q96L58 329 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 MIPEPQ99797 713 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 TRIM55Q9BYV6 548 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 NMUR2Q9GZQ4 415 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 DDIT4Q9NX09 232 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 SYBUQ9NX95 663 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 FZD10Q9ULW2 581 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 ZNF638Q14966 1978 aaKnown RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 DLDP09622 509 aaKnown RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 LRPAP1P30533 357 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 NEK3P51956 506 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 UPP1Q16831 310 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 TRIM60Q495X7 471 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 CERCAMQ5T4B2 595 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 SDHAF4Q5VUM1 108 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 RTN4RL1Q86UN2 441 aaPredicted RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 NPWQ8N729 165 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 GBP7Q8N8V2 638 aaPredicted RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 DNAAF3Q8N9W5 541 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 FAM13CQ8NE31 585 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 ACVR1CQ8NER5 493 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 RNF34Q969K3 372 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 MFSD3Q96ES6 412 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 SMOQ99835 787 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 VPS11Q9H270 941 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 ATXN3LQ9H3M9 355 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 TMLHEQ9NVH6 421 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 ATP11BQ9Y2G3 1177 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 PLLPQ9Y342 182 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 A0A0U1RQF3 1178 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 EEF2KO00418 725 aaKnown RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 COQ9O75208 318 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 TROVE2P10155 538 aaKnown RBP eCLIP9.72□□□□□ -0.853e-6■■□□□ 11.8
CUX1-206ENST00000437600 GATMP50440 423 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 CCNHP51946 323 aaPredicted RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 ALDH18A1P54886 795 aaKnown RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 PDE1BQ01064 536 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 WASHC5Q12768 1159 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 TRIM71Q2Q1W2 868 aaKnown RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 VWA5B1Q5TIE3 1220 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 TOP6BLQ8N6T0 577 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 ZMIZ2Q8NF64 920 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 DTX3LQ8TDB6 740 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 TEKT4Q8WW24 435 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 ARNTL2Q8WYA1 636 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 CLPTM1LQ96KA5 538 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 RILPQ96NA2 401 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 FCRL3Q96P31 734 aaPredicted RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 FRMD8P1Q9BZ68 369 aaPredicted RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 OGDHLQ9ULD0 1010 aa9.72□□□□□ -0.85
CUX1-206ENST00000437600 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.72□□□□□ -0.85
CUX1-206ENST00000437600 MYO7AQ13402 2215 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 CFAP73A6NFT4 308 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 DPYSL4O14531 572 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 DNAJC6O75061 913 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 GCATO75600 419 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 ALDOAP04075 364 aaKnown RBP9.71□□□□□ -0.85
CUX1-206ENST00000437600 FAM200BP0CF97 657 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 CCNB1P14635 433 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 DESP17661 470 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 PTPN9P43378 593 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 AQP5P55064 265 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 SLC18A2Q05940 514 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 PRKD1Q15139 912 aaPredicted RBP9.71□□□□□ -0.85
CUX1-206ENST00000437600 CTC1Q2NKJ3 1217 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 EFHC1Q5JVL4 640 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 FAM219BQ5XKK7 198 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 RWDD4Q6NW29 188 aaKnown RBP9.71□□□□□ -0.85
CUX1-206ENST00000437600 FBXO46Q6PJ61 603 aaPredicted RBP9.71□□□□□ -0.85
CUX1-206ENST00000437600 ARHGAP36Q6ZRI8 547 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 DEFB128Q7Z7B8 93 aa9.71□□□□□ -0.85
CUX1-206ENST00000437600 FAM35AQ86V20 835 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms