RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 GALNT2Q10471 571 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 CA9Q16790 459 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 TEX44Q53QW1 395 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 CCDC110Q8TBZ0 833 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 LINC01599Q8WXQ3 324 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 KHSRPQ92945 711 aaKnown RBP eCLIP8.61□□□□□ -1.03
USP54-203ENST00000418501 IFT43Q96FT9 208 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 P2RY11Q96G91 374 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 ZNF599Q96NL3 588 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 RTP3Q9BQQ7 232 aa8.61□□□□□ -1.03
USP54-203ENST00000418501 GMNCA6NCL1 334 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 CLDN11O75508 207 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 LRIG2O94898 1065 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 OR4Q2P0C623 313 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 MBL2P11226 248 aaPredicted RBP8.6□□□□□ -1.03
USP54-203ENST00000418501 ECHS1P30084 290 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 MAGEA6P43360 314 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 UBE3AQ05086 875 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 MPP3Q13368 585 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 RAB33AQ14088 237 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 DPYSQ14117 519 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 PRKD1Q15139 912 aaPredicted RBP8.6□□□□□ -1.03
USP54-203ENST00000418501 E2F5Q15329 346 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 MARC1Q5VT66 337 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 MIB1Q86YT6 1006 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 TAB3Q8N5C8 712 aaPredicted RBP8.6□□□□□ -1.03
USP54-203ENST00000418501 EFHBQ8N7U6 833 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 BCAS4Q8TDM0 211 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 PIWIL1Q96J94 861 aaKnown RBP8.6□□□□□ -1.03
USP54-203ENST00000418501 TTC1Q99614 292 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 PAIP2Q9BPZ3 127 aaKnown RBP8.6□□□□□ -1.03
USP54-203ENST00000418501 IL22Q9GZX6 179 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 TRABDQ9H4I3 376 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 SSU72Q9NP77 194 aaKnown RBP8.6□□□□□ -1.03
USP54-203ENST00000418501 CHMP2BQ9UQN3 213 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 FAM47DPA6NHR8 397 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 E9PAM4 449 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 C2CD2LO14523 706 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 MFSD11O43934 449 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 LUC7L3O95232 432 aaKnown RBP8.6□□□□□ -1.03
USP54-203ENST00000418501 PDE1BQ01064 536 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 GBE1Q04446 702 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 EMC10Q5UCC4 262 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 FAM117BQ6P1L5 589 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 ANKMY2Q8IV38 441 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 SLC39A11Q8N1S5 342 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 LRRC8CQ8TDW0 803 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 ARL8AQ96BM9 186 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 PKMYT1Q99640 499 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 TTLL2Q9BWV7 592 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 GPR62Q9BZJ7 368 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 EPN3Q9H201 632 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 FAM96AQ9H5X1 160 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.6□□□□□ -1.03
USP54-203ENST00000418501 WASH4PA8MWX3 477 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 MATN3O15232 486 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 ZSCAN5DPP0CG00 497 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 TROVE2P10155 538 aaKnown RBP eCLIP8.6□□□□□ -1.03
USP54-203ENST00000418501 IVDP26440 423 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 SPRP35270 261 aaPredicted RBP8.6□□□□□ -1.03
USP54-203ENST00000418501 LONRF1Q17RB8 773 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 HFE2Q6ZVN8 426 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 CACNA2D3Q8IZS8 1091 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 OTUD6BQ8N6M0 293 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 OR2W6PQ8NHA6 318 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 GIPC2Q8TF65 315 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.6□□□□□ -1.03
USP54-203ENST00000418501 MAGEH1Q9H213 219 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 GBA3Q9H227 469 aa8.6□□□□□ -1.03
USP54-203ENST00000418501 SAE1Q9UBE0 346 aaPredicted RBP8.6□□□□□ -1.03
USP54-203ENST00000418501 FARP1Q9Y4F1 1045 aaPredicted RBP8.6□□□□□ -1.03
USP54-203ENST00000418501 DCLK1O15075 740 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 TM9SF1O15321 606 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 HOXB8P17481 243 aaPredicted RBP8.59□□□□□ -1.03
USP54-203ENST00000418501 ELK3P41970 407 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 POLD3Q15054 466 aaPredicted RBP8.59□□□□□ -1.03
USP54-203ENST00000418501 PPM1LQ5SGD2 360 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 KIAA0319Q5VV43 1072 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 LRRTM3Q86VH5 581 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 HJURPQ8NCD3 748 aaPredicted RBP8.59□□□□□ -1.03
USP54-203ENST00000418501 TRMT2BQ96GJ1 504 aaKnown RBP8.59□□□□□ -1.03
USP54-203ENST00000418501 EBNA1BP2Q99848 306 aaKnown RBP8.59□□□□□ -1.03
USP54-203ENST00000418501 ZFATQ9P243 1243 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 SLC27A5Q9Y2P5 690 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 PCDHA11Q9Y5I1 949 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 NR2E3Q9Y5X4 410 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 THSD7BQ9C0I4 1608 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 TRAV19A0A0A6YYK7 116 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 SOBPA7XYQ1 873 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 E7ESA3 106 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 F8W8V4 182 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 AGPSO00116 658 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 COPEO14579 308 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 ACSL4O60488 711 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 C1RP00736 705 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 JCHAINP01591 159 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 CCNB1P14635 433 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 CHKAP35790 457 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 MAPK8P45983 427 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 CDH4P55283 916 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms