RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 CLIC5Q9NZA1 410 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 TMEM216Q9P0N5 145 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 IGSF9Q9P2J2 1179 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 CDH22Q9UJ99 828 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 AKT3Q9Y243 479 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 SNX9Q9Y5X1 595 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 PSAT1Q9Y617 370 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 SLC4A7Q9Y6M7 1214 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 SCN4AP35499 1836 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 SMIM18P0DKX4 95 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 UQCRBP14927 111 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 VCLP18206 1134 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 ITGAXP20702 1163 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 MGAT1P26572 445 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 SPRP35270 261 aaPredicted RBP10.03□□□□□ -0.8
CD44-206ENST00000415148 MSX2P35548 267 aaPredicted RBP10.03□□□□□ -0.8
CD44-206ENST00000415148 MATKP42679 507 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 RANBP1P43487 201 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 CLCN2P51788 898 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 LSAMPQ13449 338 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 MED21Q13503 144 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 EPGNQ6UW88 154 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 FAM43BQ6ZT52 329 aaPredicted RBP10.03□□□□□ -0.8
CD44-206ENST00000415148 FRMD7Q6ZUT3 714 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 FBXW8Q8N3Y1 598 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 NME8Q8N427 588 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 CCDC185Q8N715 623 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 NAT14Q8WUY8 206 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 KCNK16Q96T55 309 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 CENPKQ9BS16 269 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 RTKNQ9BST9 563 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 MAN1C1Q9NR34 630 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 ARHGAP26Q9UNA1 814 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 RAD54BQ9Y620 910 aa10.03□□□□□ -0.8
CD44-206ENST00000415148 A0A0G2JLL6 359 aaPredicted RBP10.02□□□□□ -0.8
CD44-206ENST00000415148 CAPN8A6NHC0 703 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 ASB14A6NK59 587 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 KPNA7A9QM74 516 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 RNF103O00237 685 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 TXNDC9O14530 226 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 PGK2P07205 417 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 RAG1P15918 1043 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 GOT1P17174 413 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 SERPINB8P50452 374 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 ATXN1P54253 815 aaKnown RBP10.02□□□□□ -0.8
CD44-206ENST00000415148 SH3BGRP55822 239 aaPredicted RBP10.02□□□□□ -0.8
CD44-206ENST00000415148 IGBP1P78318 339 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 USP4Q13107 963 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 DYNC1I2Q13409 638 aaKnown RBP10.02□□□□□ -0.8
CD44-206ENST00000415148 PAFAH1B3Q15102 231 aaKnown RBP10.02□□□□□ -0.8
CD44-206ENST00000415148 SLC25A52Q3SY17 297 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 UGT2A3Q6UWM9 527 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 GADL1Q6ZQY3 521 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 PRRT2Q7Z6L0 340 aaPredicted RBP10.02□□□□□ -0.8
CD44-206ENST00000415148 SDCCAG8Q86SQ7 713 aaPredicted RBP10.02□□□□□ -0.8
CD44-206ENST00000415148 ZNF410Q86VK4 478 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 FBXO16Q8IX29 292 aaPredicted RBP10.02□□□□□ -0.8
CD44-206ENST00000415148 ST13P4Q8IZP2 240 aaPredicted RBP10.02□□□□□ -0.8
CD44-206ENST00000415148 DRAXINQ8NBI3 349 aaPredicted RBP10.02□□□□□ -0.8
CD44-206ENST00000415148 BEST2Q8NFU1 509 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 OR6B3Q8NGW1 331 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 COPS5Q92905 334 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 CERS2Q96G23 380 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 P2RY11Q96G91 374 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 BTBD9Q96Q07 612 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 GCNAQ96QF7 691 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 HAPLN3Q96S86 360 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 CDH19Q9H159 772 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 LRRC40Q9H9A6 602 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 FAM49BQ9NUQ9 324 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 UBAP1Q9NZ09 502 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 POMPQ9Y244 141 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 NME7Q9Y5B8 376 aa10.02□□□□□ -0.8
CD44-206ENST00000415148 ZNF638Q14966 1978 aaKnown RBP10.02□□□□□ -0.8
CD44-206ENST00000415148 BRCA1P38398 1863 aaKnown RBP10.02□□□□□ -0.81
CD44-206ENST00000415148 A0A1B0GTW7 788 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 MAGEB16A2A368 324 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 SLC22A2O15244 555 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 AP1G1O43747 822 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 ZBTB14O43829 449 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 LGALS2P05162 132 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 COX4I1P13073 169 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 NUMBP49757 651 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 PRKAA2P54646 552 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 MTTPP55157 894 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 SESN2P58004 480 aaPredicted RBP10.02□□□□□ -0.81
CD44-206ENST00000415148 GRM2Q14416 872 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 TLR1Q15399 786 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 TRIP10Q15642 601 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 SOWAHAQ2M3V2 549 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 PABPC1LQ4VXU2 614 aaKnown RBP10.02□□□□□ -0.81
CD44-206ENST00000415148 KBTBD6Q86V97 674 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 TMEM126BQ8IUX1 230 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 DEFB107AQ8IZN7 70 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 LGMNQ99538 433 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 RBBP8Q99708 897 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 MROH8Q9H579 483 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 SYBUQ9NX95 663 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 NDUFA13Q9P0J0 144 aa10.02□□□□□ -0.81
CD44-206ENST00000415148 HSFX1Q9UBD0 423 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms