RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 CPQQ9Y646 472 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.55□□□□□ -0.88
VPS53-203ENST00000401468 ASCC3Q8N3C0 2202 aaKnown RBP9.55□□□□□ -0.88
VPS53-203ENST00000401468 LEFTY2O00292 366 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 MDM4O15151 490 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 IRAK2O43187 625 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 NRDCO43847 1150 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 LILRB5O75023 590 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 TBX18O95935 607 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 MBL2P11226 248 aaPredicted RBP9.54□□□□□ -0.88
VPS53-203ENST00000401468 ABCB4P21439 1286 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 IFNAR2P48551 515 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 CCR3P51677 355 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 ZNF143P52747 638 aaPredicted RBP9.54□□□□□ -0.88
VPS53-203ENST00000401468 PITX1P78337 314 aaPredicted RBP9.54□□□□□ -0.88
VPS53-203ENST00000401468 OGDHQ02218 1023 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 USP4Q13107 963 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 SIM2Q14190 667 aaPredicted RBP9.54□□□□□ -0.88
VPS53-203ENST00000401468 LRRC32Q14392 662 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 TRIP4Q15650 581 aaPredicted RBP9.54□□□□□ -0.88
VPS53-203ENST00000401468 EML3Q32P44 896 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 ZNF528Q3MIS6 628 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 CCDC14Q49A88 953 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 HS1BP3Q53T59 392 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 C2orf27AQ580R0 203 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 STRADAQ7RTN6 431 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 TAC4Q86UU9 113 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 C12orf40Q86WS4 652 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 FAM217AQ8IXS0 508 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 DEFB106AQ8N104 65 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 SPEM1Q8N4L4 309 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 CCDC33Q8N5R6 958 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 ACRBPQ8NEB7 543 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 RPLP0P6Q8NHW5 317 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 RXFP2Q8WXD0 754 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 EDEM1Q92611 657 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 GOLGA1Q92805 767 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 E2F7Q96AV8 911 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 FAM149B1Q96BN6 582 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 MCEEQ96PE7 176 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 CNPY3Q9BT09 278 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 SELENOOQ9BVL4 669 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 NUP85Q9BW27 656 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 TRIM7Q9C029 511 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 LACRTQ9GZZ8 138 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 C8orf33Q9H7E9 229 aaPredicted RBP9.54□□□□□ -0.88
VPS53-203ENST00000401468 ECT2Q9H8V3 914 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 KIF9Q9HAQ2 790 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 TRPV5Q9NQA5 729 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.54□□□□□ -0.88
VPS53-203ENST00000401468 CFAP97Q9P2B7 532 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 RALYQ9UKM9 306 aaKnown RBP9.54□□□□□ -0.88
VPS53-203ENST00000401468 TLR6Q9Y2C9 796 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 PCDHGA2Q9Y5H1 932 aa9.54□□□□□ -0.88
VPS53-203ENST00000401468 DCDC2BA2VCK2 349 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 GOLGA8SH3BPF8 625 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 GFRA2O00451 464 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 TRIM24O15164 1050 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 GRAP2O75791 330 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 IPO7O95373 1038 aaKnown RBP9.53□□□□□ -0.88
VPS53-203ENST00000401468 GJB6O95452 261 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 LATS1O95835 1130 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 TRUB2O95900 331 aaKnown RBP9.53□□□□□ -0.88
VPS53-203ENST00000401468 CCDC175P0C221 793 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 PDGFRAP16234 1089 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 TFE3P19532 575 aaPredicted RBP9.53□□□□□ -0.88
VPS53-203ENST00000401468 GPD1P21695 349 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 MAN1A1P33908 653 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 ARHGAP25P42331 645 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 CXCR3P49682 368 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 HDAC4P56524 1084 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 COG7P83436 770 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 PPP2R5DQ14738 602 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 ST3GAL2Q16842 350 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 DCAF6Q58WW2 860 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 TMEM196Q5HYL7 178 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 C10orf120Q5SQS8 335 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 ARTNQ5T4W7 220 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 EMC10Q5UCC4 262 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 CYP4V2Q6ZWL3 525 aaPredicted RBP9.53□□□□□ -0.88
VPS53-203ENST00000401468 CEP68Q76N32 757 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 DDX42Q86XP3 938 aaKnown RBP eCLIP9.53□□□□□ -0.88
VPS53-203ENST00000401468 TXLNBQ8N3L3 684 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 ARFGAP1Q8N6T3 406 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 EMC1Q8N766 993 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 NAT16Q8N8M0 369 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 SLC35G2Q8TBE7 412 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 ZNF564Q8TBZ8 553 aaPredicted RBP9.53□□□□□ -0.88
VPS53-203ENST00000401468 NELL1Q92832 810 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 BHMTQ93088 406 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 AZIN2Q96A70 460 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 PLD4Q96BZ4 506 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 SERPINB11Q96P15 392 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 TBCBQ99426 244 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 P2RY13Q9BPV8 354 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 DESI2Q9BSY9 194 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 TPSD1Q9BZJ3 242 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 EPC1Q9H2F5 836 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 OSGEPQ9NPF4 335 aa9.53□□□□□ -0.88
VPS53-203ENST00000401468 MARCH2Q9P0N8 246 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms