RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CDHR3Q6ZTQ4 885 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 PAGE2Q7Z2X7 111 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 MCPH1Q8NEM0 835 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 OLFM1Q99784 485 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 FRMD8P1Q9BZ68 369 aaPredicted RBP9.5□□□□□ -0.89
COL28A1-201ENST00000399429 WDR12Q9GZL7 423 aaKnown RBP9.5□□□□□ -0.89
COL28A1-201ENST00000399429 POLR3FQ9H1D9 316 aaPredicted RBP9.5□□□□□ -0.89
COL28A1-201ENST00000399429 GNPTGQ9UJJ9 305 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 PNMA8BQ9ULN7 279 aaPredicted RBP9.5□□□□□ -0.89
COL28A1-201ENST00000399429 FNDC3AQ9Y2H6 1198 aaKnown RBP9.5□□□□□ -0.89
COL28A1-201ENST00000399429 SNCAIPQ9Y6H5 919 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 SUPT7LO94864 414 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 CYP2C9P11712 490 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 MGAT1P26572 445 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 KLRC2P26717 231 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 CRHR1P34998 444 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 SREBF1P36956 1147 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 CYP24A1Q07973 514 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 AASDHQ4L235 1098 aaPredicted RBP9.5□□□□□ -0.89
COL28A1-201ENST00000399429 DCAF6Q58WW2 860 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 UBR7Q8N806 425 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 ZNF781Q8N8C0 355 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 SLC4A11Q8NBS3 891 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 CHST12Q9NRB3 414 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 SIGLEC16A6NMB1 481 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 HNRNPCL2B2RXH8 293 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 VWA5AO00534 786 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 NDUFB10O96000 172 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 TCEA1P23193 301 aaKnown RBP9.5□□□□□ -0.89
COL28A1-201ENST00000399429 MPSTP25325 297 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 SLC7A2P52569 658 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 PHC1P78364 1004 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 SLC35G1Q2M3R5 365 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 HYIQ5T013 277 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 ARMC4Q5T2S8 1044 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 GK5Q6ZS86 529 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 CDH19Q9H159 772 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 PLEKHA5Q9HAU0 1116 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 SPAG4Q9NPE6 437 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 ENTPD7Q9NQZ7 604 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 STMN3Q9NZ72 180 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 KIF17Q9P2E2 1029 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 MYO1GB0I1T2 1018 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 MTA2O94776 668 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 GP5P40197 560 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 NPTX2P47972 431 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 PLK1P53350 603 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 SIX1Q15475 284 aaPredicted RBP9.49□□□□□ -0.89
COL28A1-201ENST00000399429 MOGQ16653 247 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 DUOXA2Q1HG44 320 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 TNFAIP8L3Q5GJ75 292 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 OTOP1Q7RTM1 612 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 TMEM143Q96AN5 459 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 VCPIP1Q96JH7 1222 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 ELMO2Q96JJ3 720 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 HERPUD2Q9BSE4 406 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 ADI1Q9BV57 179 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 CCDC106Q9BWC9 280 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 TRPV5Q9NQA5 729 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 NCKIPSDQ9NZQ3 722 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 IPPQ9Y573 584 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 TECPR2O15040 1411 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 TMEM131LA2VDJ0 1609 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 ATP6AP2A0A1C7CYW4 349 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 DHRS12A0PJE2 317 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 A8MU76 341 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 TCP10L2B9ZVM9 353 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 E7ENX8 843 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 SLCO1B7G3V0H7 640 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 ATP6AP2O75787 350 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 MIPP30301 263 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 MYBPC1Q00872 1141 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 MSLNQ13421 630 aaPredicted RBP9.49□□□□□ -0.89
COL28A1-201ENST00000399429 PITRM1Q5JRX3 1037 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 TMEM198Q66K66 360 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 TRMT10BQ6PF06 316 aaKnown RBP9.49□□□□□ -0.89
COL28A1-201ENST00000399429 NEK10Q6ZWH5 1172 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 CDH24Q86UP0 819 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 PEX5LQ8IYB4 626 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 UBASH3BQ8TF42 649 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 CD101Q93033 1021 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 PHF21BQ96EK2 531 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 BDH2Q9BUT1 245 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 TARS2Q9BW92 718 aaKnown RBP9.49□□□□□ -0.89
COL28A1-201ENST00000399429 IARS2Q9NSE4 1012 aaKnown RBP9.49□□□□□ -0.89
COL28A1-201ENST00000399429 POLIQ9UNA4 740 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 SPEF1Q9Y4P9 236 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 IFT172Q9UG01 1749 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 ZNF536O15090 1300 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 KCNU1A8MYU2 1149 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 DENRO43583 198 aaKnown RBP9.49□□□□□ -0.89
COL28A1-201ENST00000399429 SLC4A1P02730 911 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 FGFR1P11362 822 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 TCF4P15884 667 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 ADSSP30520 456 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 DSG3P32926 999 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 HOXD13P35453 343 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 AARS2Q5JTZ9 985 aaKnown RBP9.49□□□□□ -0.89
COL28A1-201ENST00000399429 MOXD1Q6UVY6 613 aa9.49□□□□□ -0.89
COL28A1-201ENST00000399429 UNC5AQ6ZN44 842 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms