RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 CLIC5Q9NZA1 410 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 SAE1Q9UBE0 346 aaPredicted RBP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 PCYOX1Q9UHG3 505 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 SMG5Q9UPR3 1016 aaKnown RBP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 MEIS3P2A8K0S8 358 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 KCNU1A8MYU2 1149 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 CLGNO14967 610 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 DDHD2O94830 711 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 CCNB1P14635 433 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 RHOQP17081 205 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 SERPINA4P29622 427 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 YBEYP58557 167 aaPredicted RBP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 SNRPD1P62314 119 aaKnown RBP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 PPP2R2AP63151 447 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 DPYSL3Q14195 570 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 ZKSCAN8Q15776 578 aaPredicted RBP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 ZNF284Q2VY69 593 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 LRRC57Q8N9N7 239 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 LPCAT1Q8NF37 534 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 DIS3LQ8TF46 1054 aaKnown RBP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 TRABDQ9H4I3 376 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 ALG13Q9NP73 1137 aaKnown RBP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 CRTAC1Q9NQ79 661 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 KIAA1522Q9P206 1035 aaPredicted RBP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 MYH7BA7E2Y1 1941 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 SPTLC1O15269 473 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 NFATC1O95644 943 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 HSPA4LO95757 839 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 RB1P06400 928 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 ITGALP20701 1170 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 TACR2P21452 398 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 RGS4P49798 205 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 RASSF2P50749 326 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 SYTL3Q4VX76 610 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 ANKRD20A2Q5SQ80 823 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 ANKRD20A1Q5TYW2 823 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 COLGALT2Q8IYK4 626 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 NIPA2Q8N8Q9 360 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 PRELID2Q8N945 189 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 EGFL8Q99944 293 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 FAM167BQ9BTA0 163 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 CFHR5Q9BXR6 569 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 GPR62Q9BZJ7 368 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 FBXL21Q9UKT6 434 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 CPQQ9Y646 472 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 ACADMP11310 421 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 SULT2A1Q06520 285 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 SF3A3Q12874 501 aaKnown RBP eCLIP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 NPNTQ6UXI9 565 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 ARHGAP24Q8N264 748 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 RAB42Q8N4Z0 105 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 ARL14EPQ8N8R7 260 aaPredicted RBP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 KLHL23Q8NBE8 558 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 CASP10Q92851 521 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 ELMO2Q96JJ3 720 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 FOPNLQ96NB1 174 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 SRPK1Q96SB4 655 aaKnown RBP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 PNKPQ96T60 521 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 RHOBTB2Q9BYZ6 727 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 MPP6Q9NZW5 540 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 SCML2Q9UQR0 700 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 BACE2Q9Y5Z0 518 aa8.47□□□□□ -1.05
PTPRD-204ENST00000397606 MYH9P35579 1960 aaKnown RBP8.47□□□□□ -1.05
PTPRD-204ENST00000397606 SMIM24O75264 130 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 CES1P23141 567 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 ZNF132P52740 706 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 ILF2Q12905 390 aaKnown RBP8.46□□□□□ -1.05
PTPRD-204ENST00000397606 LONRF1Q17RB8 773 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 PARP15Q460N3 678 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 ARMC12Q5T9G4 340 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 RNF135Q8IUD6 432 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 CRLF3Q8IUI8 442 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 DCLK2Q8N568 766 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 ZCWPW1Q9H0M4 648 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 FBXW11Q9UKB1 542 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 HEATR9A2RTY3 570 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 E9PAM4 449 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 TRDMT1O14717 391 aaKnown RBP8.46□□□□□ -1.05
PTPRD-204ENST00000397606 HIST1H2AGP0C0S8 130 aaPredicted RBP8.46□□□□□ -1.05
PTPRD-204ENST00000397606 HSPA8P11142 646 aaKnown RBP8.46□□□□□ -1.05
PTPRD-204ENST00000397606 HIST1H2ADP20671 130 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 CDH5P33151 784 aaPredicted RBP8.46□□□□□ -1.05
PTPRD-204ENST00000397606 STX1BP61266 288 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 CLLU1OSQ5K130 101 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 TTC19Q6DKK2 380 aaPredicted RBP8.46□□□□□ -1.05
PTPRD-204ENST00000397606 ALLCQ8N6M5 410 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 LINC01465Q8N7H1 131 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.46□□□□□ -1.05
PTPRD-204ENST00000397606 LRRC39Q96DD0 335 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 ZNF333Q96JL9 665 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 HIST1H2AHQ96KK5 128 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 SMOQ99835 787 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 HIST1H2AJQ99878 128 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 H2AFJQ9BTM1 129 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 TLR6Q9Y2C9 796 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 INSL5Q9Y5Q6 135 aa8.46□□□□□ -1.05
PTPRD-204ENST00000397606 DDX3YO15523 660 aaKnown RBP8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms