RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 RPS7P62081 194 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 NEDD8Q15843 81 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 ZNF284Q2VY69 593 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 SCARA3Q6AZY7 606 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 EXOC3L1Q86VI1 746 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 CYP4Z2PQ8N1L4 340 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 LZTR1Q8N653 840 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 ACOX2Q99424 681 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 YIPF2Q9BWQ6 316 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 SERHL2Q9H4I8 314 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 WDR41Q9HAD4 459 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 SERHLQ9NQF3 203 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 AP3M1Q9Y2T2 418 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 SLIT1O75093 1534 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 PDE2AO00408 941 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 TFRCP02786 760 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 RHOCP08134 193 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 SERPINF2P08697 491 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 PIK3R1P27986 724 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 HALP42357 657 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 GRSF1Q12849 480 aaKnown RBP eCLIP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 NFE2Q16621 373 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 ARMC6Q6NXE6 501 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 ZPBP2Q6X784 338 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 OOSP2Q86WS3 158 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 FIG4Q92562 907 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 RNFT2Q96EX2 444 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 VAT1Q99536 393 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 MTIF3Q9H2K0 278 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 UBP1Q9NZI7 540 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 PCYOX1Q9UHG3 505 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 DUSP12Q9UNI6 340 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 MYL4P12829 197 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 TSHRP16473 764 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 JAK1P23458 1154 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 GSTT1P30711 240 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 RENBPP51606 427 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 KPNA1P52294 538 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 ATP12AP54707 1039 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 DRG2P55039 364 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 FRG1Q14331 258 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 VPS72Q15906 364 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 C16orf62Q7Z3J2 963 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 TMC7Q7Z402 723 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 TMEM110Q86TL2 294 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 FAM126BQ8IXS8 530 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 GALNT6Q8NCL4 622 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 OR56A4Q8NGH8 313 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 AGAP11Q8TF27 550 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 C6orf62Q9GZU0 229 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 ASB7Q9H672 318 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 RPLP2P05387 115 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 ABHD2P08910 425 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 CCR1P32246 355 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 AUHQ13825 339 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 ARHGAP15Q53QZ3 475 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 METTL7BQ6UX53 244 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 BRSK2Q8IWQ3 736 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 NUDT12Q9BQG2 462 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 RERGLQ9H628 205 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 RPL26L1Q9UNX3 145 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 TELO2Q9Y4R8 837 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 SPATA31A1Q5TZJ5 1347 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 CCDC154A6NI56 674 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 BTNL10A8MVZ5 291 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 TSPAN4O14817 238 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 SLITRK3O94933 977 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 UPP2O95045 317 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 GSTM1P09488 218 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 ZNF135P52742 658 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 NDST1P52848 882 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 RHOAP61586 193 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 BNC1Q01954 994 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 LAMTOR4Q0VGL1 99 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 FAPQ12884 760 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 DPYSL3Q14195 570 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 USP39Q53GS9 565 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 UTP15Q8TED0 518 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 COPS7BQ9H9Q2 264 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 MID1IP1Q9NPA3 183 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 TAS2R13Q9NYV9 303 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 CCL15-CCL14A0A0B4J2E2 113 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 SLC12A8A0AV02 714 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 THP07101 528 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 PPP2R1BP30154 601 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 CENPAP49450 140 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 BACE1P56817 501 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 EFEMP1Q12805 493 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 CBX3Q13185 183 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 TMEM132BQ14DG7 1078 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 CCL15Q16663 113 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 ZNF57Q68EA5 555 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 NET1Q7Z628 596 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 FNDC5Q8NAU1 212 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 UXS1Q8NBZ7 420 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 LENG1Q96BZ8 264 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 RNF145Q96MT1 663 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 C1orf50Q9BV19 199 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 PIF1Q9H611 641 aa10.44□□□□□ -0.74
LIMCH1-203ENST00000396595 C8orf4Q9NR00 106 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms