RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 TOP6BLQ8N6T0 577 aa11.11□□□□□ -0.63
NEDD9-201ENST00000379433 DNAAF3Q8N9W5 541 aa11.11□□□□□ -0.63
NEDD9-201ENST00000379433 CORO1BQ9BR76 489 aa11.11□□□□□ -0.63
NEDD9-201ENST00000379433 ATXN3LQ9H3M9 355 aa11.11□□□□□ -0.63
NEDD9-201ENST00000379433 USP29Q9HBJ7 922 aa11.11□□□□□ -0.63
NEDD9-201ENST00000379433 CREBZFQ9NS37 354 aa11.11□□□□□ -0.63
NEDD9-201ENST00000379433 CCDC195A0A1B0GUA6 201 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 ALOX15P16050 662 aaPredicted RBP11.1□□□□□ -0.63
NEDD9-201ENST00000379433 HOXC13P31276 330 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 TSPAN7P41732 249 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 ACADSBP45954 432 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 TM4SF4P48230 202 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 STAT4Q14765 748 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 MUM1Q2TAK8 710 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 TFAP2DQ7Z6R9 452 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 DBF4BQ8NFT6 615 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 TTC17Q96AE7 1141 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 SEPT5Q99719 369 aaPredicted RBP11.1□□□□□ -0.63
NEDD9-201ENST00000379433 FAM129AQ9BZQ8 928 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 CNOT10Q9H9A5 744 aaKnown RBP11.1□□□□□ -0.63
NEDD9-201ENST00000379433 UBN1Q9NPG3 1134 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 SHOC2Q9UQ13 582 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 A0A0U1RQF3 1178 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 TCRBV9S1A1TA0A576 114 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 C9IYK1 514 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 RNF103O00237 685 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 VAV1P15498 845 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 ERCC2P18074 760 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 PSMB4P28070 264 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 PCSK1P29120 753 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 LHX1P48742 406 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 PGGT1BP53609 377 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 NCBP2-AS2Q69YL0 99 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 PPP4R4Q6NUP7 873 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 TMEM151BQ8IW70 566 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 COLGALT1Q8NBJ5 622 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 PCSK9Q8NBP7 692 aaKnown RBP11.1□□□□□ -0.63
NEDD9-201ENST00000379433 SMC1BQ8NDV3 1235 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 ANKK1Q8NFD2 765 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 TFB1MQ8WVM0 346 aaKnown RBP11.1□□□□□ -0.63
NEDD9-201ENST00000379433 HSFY1Q96LI6 401 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 MPP6Q9NZW5 540 aa11.1□□□□□ -0.63
NEDD9-201ENST00000379433 WDR27A2RRH5 827 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 CXorf49A8MYA2 514 aaPredicted RBP11.09□□□□□ -0.63
NEDD9-201ENST00000379433 STAU1O95793 577 aaKnown RBP11.09□□□□□ -0.63
NEDD9-201ENST00000379433 FYNP06241 537 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 ATP2A2P16615 1042 aaKnown RBP11.09□□□□□ -0.63
NEDD9-201ENST00000379433 RPL17P18621 184 aaKnown RBP11.09□□□□□ -0.63
NEDD9-201ENST00000379433 WARSP23381 471 aaKnown RBP11.09□□□□□ -0.63
NEDD9-201ENST00000379433 NOS2P35228 1153 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 FAAP100Q0VG06 881 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 MBTPS1Q14703 1052 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 FAM171A1Q5VUB5 890 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 FBXW10Q5XX13 1052 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 RTN4RL1Q86UN2 441 aaPredicted RBP11.09□□□□□ -0.63
NEDD9-201ENST00000379433 SPNS2Q8IVW8 549 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 ARL6IP6Q8N6S5 226 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 CCDC63Q8NA47 563 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 ATXN2LQ8WWM7 1075 aaKnown RBP11.09□□□□□ -0.63
NEDD9-201ENST00000379433 DNAAF2Q9NVR5 837 aaKnown RBP11.09□□□□□ -0.63
NEDD9-201ENST00000379433 CLIC5Q9NZA1 410 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 OR12D3Q9UGF7 316 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 SRRDQ9UH36 339 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 DCTN4Q9UJW0 460 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 Q9Y3F1 56 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 ALOX15BO15296 676 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 CPB1P15086 417 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 GCAP28676 217 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 ATP5DP30049 168 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 PHBP35232 272 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 ARPC4P59998 168 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 TSPY1Q01534 308 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 ACAP1Q15027 740 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 ARHGAP22Q7Z5H3 698 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 AGGF1Q8N302 714 aaeCLIP11.09□□□□□ -0.636e-8■□□□□ 10.6
NEDD9-201ENST00000379433 HTR3CQ8WXA8 447 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 P2RY11Q96G91 374 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 SMARCD1Q96GM5 515 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 EPAS1Q99814 870 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 FARP1Q9Y4F1 1045 aaPredicted RBP11.09□□□□□ -0.63
NEDD9-201ENST00000379433 TBKBP1A7MCY6 615 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 KATNA1O75449 491 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 ADRA1DP25100 572 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 GEMIN4P57678 1058 aaKnown RBP11.09□□□□□ -0.63
NEDD9-201ENST00000379433 DAOAP59103 153 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 BTBD8Q5XKL5 378 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 IRGCQ6NXR0 463 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 PNPLA1Q8N8W4 532 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 PPP1R14BQ96C90 147 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 DEFB118Q96PH6 123 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 ROPN1BQ9BZX4 212 aaPredicted RBP11.09□□□□□ -0.63
NEDD9-201ENST00000379433 ROPN1Q9HAT0 212 aaPredicted RBP11.09□□□□□ -0.63
NEDD9-201ENST00000379433 PAK5Q9P286 719 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 SLC17A7Q9P2U7 560 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 GIT1Q9Y2X7 761 aa11.09□□□□□ -0.63
NEDD9-201ENST00000379433 MT-ND3P03897 115 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 LRPAP1P30533 357 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 MTFR1Q15390 333 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 SLC1A5Q15758 541 aa11.08□□□□□ -0.64
NEDD9-201ENST00000379433 MGAT5BQ3V5L5 792 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms