RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 CELF5Q8N6W0 485 aaKnown RBP12.81□□□□□ -0.36
VRK3-202ENST00000377011 SH3RF2Q8TEC5 729 aa12.81□□□□□ -0.36
VRK3-202ENST00000377011 DEPDC1BQ8WUY9 529 aa12.81□□□□□ -0.36
VRK3-202ENST00000377011 CCT6BQ92526 530 aa12.81□□□□□ -0.36
VRK3-202ENST00000377011 P2RY11Q96G91 374 aa12.81□□□□□ -0.36
VRK3-202ENST00000377011 SELENOSQ9BQE4 189 aa12.81□□□□□ -0.36
VRK3-202ENST00000377011 FBRSL1Q9HCM7 1045 aaKnown RBP12.81□□□□□ -0.36
VRK3-202ENST00000377011 MRPL47Q9HD33 250 aaKnown RBP12.81□□□□□ -0.36
VRK3-202ENST00000377011 TSPAN16Q9UKR8 245 aa12.81□□□□□ -0.36
VRK3-202ENST00000377011 SCINQ9Y6U3 715 aa12.81□□□□□ -0.36
VRK3-202ENST00000377011 PIAS3Q9Y6X2 628 aa12.81□□□□□ -0.36
VRK3-202ENST00000377011 ZFHX2Q9C0A1 2572 aaPredicted RBP12.81□□□□□ -0.36
VRK3-202ENST00000377011 TRAV19A0A0A6YYK7 116 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 TCRBV7S2A1N4TA0A589 114 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 CHADO15335 359 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 PROSCO94903 275 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 KRT5P13647 590 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 CD19P15391 556 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 NSFP46459 744 aaKnown RBP12.8□□□□□ -0.36
VRK3-202ENST00000377011 USP4Q13107 963 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 UBXN2BQ14CS0 331 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 CCNG2Q16589 344 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 PKDCCQ504Y2 493 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 MON1BQ7L1V2 547 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 KATNAL2Q8IYT4 538 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 RBBP8NLQ8NC74 664 aaPredicted RBP12.8□□□□□ -0.36
VRK3-202ENST00000377011 PJA1Q8NG27 643 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 ATL2Q8NHH9 583 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 CCHCR1Q8TD31 782 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 MYCBPQ99417 103 aaPredicted RBP12.8□□□□□ -0.36
VRK3-202ENST00000377011 DCLK3Q9C098 648 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 CDC42EP4Q9H3Q1 356 aaKnown RBP12.8□□□□□ -0.36
VRK3-202ENST00000377011 LTB4R2Q9NPC1 389 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 FAM86C1Q9NVL1 165 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 C2orf42Q9NWW7 574 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 SAMD15Q9P1V8 674 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 CNTN6Q9UQ52 1028 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 CPQQ9Y646 472 aa12.8□□□□□ -0.36
VRK3-202ENST00000377011 A0A1W2PQH9 124 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 KANSL1LA0AUZ9 987 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 TLDC2A0PJX2 215 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 CCT8L1PA6NM43 557 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 H0Y858 1186 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 LEFTY2O00292 366 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 DPYSL4O14531 572 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 USP17L7P0C7H9 530 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 TBXAS1P24557 533 aaPredicted RBP12.79□□□□□ -0.36
VRK3-202ENST00000377011 DDX6P26196 483 aaKnown RBP eCLIP12.79□□□□□ -0.36
VRK3-202ENST00000377011 RDXP35241 583 aaKnown RBP12.79□□□□□ -0.36
VRK3-202ENST00000377011 CETN2P41208 172 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 CLCN5P51795 746 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 LMNB2Q03252 620 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 MESP2Q0VG99 397 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 XRCC4Q13426 336 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 CNGA2Q16280 664 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 PHF13Q86YI8 300 aaPredicted RBP12.79□□□□□ -0.36
VRK3-202ENST00000377011 RHOT1Q8IXI2 618 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 CCDC89Q8N998 374 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 MDM1Q8TC05 714 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 IRF7Q92985 503 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 FAXDC2Q96IV6 333 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 BTBD6Q96KE9 485 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 PLCD4Q9BRC7 762 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 LRRC4CQ9HCJ2 640 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 SLC40A1Q9NP59 571 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 POLR3BQ9NW08 1133 aaPredicted RBP12.79□□□□□ -0.36
VRK3-202ENST00000377011 OBP2AQ9NY56 170 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 ASIC3Q9UHC3 531 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 LGALS13Q9UHV8 139 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 NDRG2Q9UN36 371 aaKnown RBP12.79□□□□□ -0.36
VRK3-202ENST00000377011 ACTL7BQ9Y614 415 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 USP3Q9Y6I4 520 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 CFAP54Q96N23 3096 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 FAM170BA6NMN3 283 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 TP73O15350 636 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 TTC4O95801 387 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 ABHD2P08910 425 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 IVDP26440 423 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 SCTRP47872 440 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 RGS7P49802 495 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 IFI35P80217 286 aaPredicted RBP12.79□□□□□ -0.36
VRK3-202ENST00000377011 KLF1Q13351 362 aaPredicted RBP12.79□□□□□ -0.36
VRK3-202ENST00000377011 GAS6Q14393 721 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 GAB4Q2WGN9 574 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 YAF2Q8IY57 180 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 MAML2Q8IZL2 1156 aaPredicted RBP12.79□□□□□ -0.36
VRK3-202ENST00000377011 RIBC1Q8N443 379 aaPredicted RBP12.79□□□□□ -0.36
VRK3-202ENST00000377011 ANKRD52Q8NB46 1076 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 EXD1Q8NHP7 514 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 EPS8L3Q8TE67 593 aaKnown RBP12.79□□□□□ -0.36
VRK3-202ENST00000377011 DNASE1L2Q92874 299 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 CEP295NLQ96MC4 621 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 SLITRK1Q96PX8 696 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 TJP2Q9UDY2 1190 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 CYTH4Q9UIA0 394 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 ARHGAP26Q9UNA1 814 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 SIT1Q9Y3P8 196 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 NEU2Q9Y3R4 380 aa12.79□□□□□ -0.36
VRK3-202ENST00000377011 SPECC1L-ADORA2AF8WAN1 911 aa12.78□□□□□ -0.36
VRK3-202ENST00000377011 THAP12O43422 761 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms