RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PTCHD4Q6ZW05 846 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 PLCZ1Q86YW0 608 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 LZTR1Q8N653 840 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF454Q8N9F8 522 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 OR52L1Q8NGH7 329 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 RP9Q8TA86 221 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 C1orf216Q8TAB5 229 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 TRAPPC12Q8WVT3 735 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SMG7Q92540 1137 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 PIK3R3Q92569 461 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 OSBPL2Q9H1P3 480 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SEC31BQ9NQW1 1179 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ARMCX1Q9P291 453 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 CLIC4Q9Y696 253 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 NCAPD3P42695 1498 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 CCDC141Q6ZP82 1450 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 EFCAB10A6NFE3 127 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ADAMTS3O15072 1205 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 KCNN4O15554 427 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 PQBP1O60828 265 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 URODP06132 367 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 CHRNGP07510 517 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 KELP23276 732 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 NR2F2P24468 414 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 CCNG1P51959 295 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 TIMM10P62072 90 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 C5orf22Q49AR2 442 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 EFHC1Q5JVL4 640 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM164Q5U3C3 297 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 PAPD7Q5XG87 772 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 GGNBP1Q5YKI7 109 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 RNF180Q86T96 592 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SAPCD2Q86UD0 394 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SPPL2AQ8TCT8 520 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 GPKOWQ92917 476 aaPredicted RBP eCLIP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 P2RX5Q93086 422 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 MTFMTQ96DP5 389 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 PPP1R10Q96QC0 940 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SLC4A5Q9BY07 1137 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 EFCAB1Q9HAE3 211 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 EPB41L5Q9HCM4 733 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 MAPRE3Q9UPY8 281 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 HECW1Q76N89 1606 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ZSCAN5BA6NJL1 495 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 FAM196BA6NMK8 535 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 E9PI62 339 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 VPS26AO75436 327 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 AP2A1O95782 977 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ALOX12P18054 663 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 CYP2B6P20813 491 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 CSTF2P33240 577 aaKnown RBP eCLIP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 SLC10A7Q0GE19 358 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 MAPK14Q16539 360 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 UNC5CLQ8IV45 518 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ZC3H10Q96K80 434 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 MTG1Q9BT17 334 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 GOLGA2P5Q9HBQ8 144 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 GGA3Q9NZ52 723 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 RGS17Q9UGC6 210 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 SAMD4AQ9UPU9 718 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 CASKIN1Q8WXD9 1431 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 C2orf81A6NN90 581 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 PSMD3O43242 534 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 PGK1P00558 417 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ERCC2P18074 760 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 LHCGRP22888 699 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 IFNGR2P38484 337 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 RBL2Q08999 1139 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 USP10Q14694 798 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ADNP2Q6IQ32 1131 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 MON1BQ7L1V2 547 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 YTHDF3Q7Z739 585 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 RASGRP3Q8IV61 690 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 HOMEZQ8IX15 550 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 GRAMD1CQ8IYS0 662 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 SLC35F6Q8N357 371 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 SNX27Q96L92 541 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 SERPINB12Q96P63 405 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 GAL3ST1Q99999 423 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM60Q9H2L4 133 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 VRTNQ9H8Y1 702 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 NAGPAQ9UK23 515 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 GMEB2Q9UKD1 530 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 CDYLQ9Y232 598 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 NPFFR2Q9Y5X5 522 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ZHX2Q9Y6X8 837 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ARID1AO14497 2285 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 OR6C6A6NF89 314 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 USP27XA6NNY8 438 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 HSBP1L1C9JCN9 74 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 H7C1Q1 480 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 PLK4O00444 970 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 APOL1O14791 398 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 NCAM2O15394 837 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 PTPN3P26045 913 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 GRIK2Q13002 908 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TFDP3Q5H9I0 405 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ARL10Q8N8L6 244 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ANKK1Q8NFD2 765 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms