RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 PLA2G4CQ9UP65 541 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 ZNF510Q9Y2H8 683 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 ENTPD2Q9Y5L3 495 aa8.85□□□□□ -0.99
HMGB1P39-201ENST00000366304 MYH10P35580 1976 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 CREBBPQ92793 2442 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 A0A087X0B3 334 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 TTC34A8MYJ7 566 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 PABPC1P11940 636 aaKnown RBP8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 TNNI1P19237 187 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 WT1P19544 449 aaPredicted RBP8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 MAT2AP31153 395 aaKnown RBP8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 SLC8A1P32418 973 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 DRD3P35462 400 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 FBN2P35556 2912 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 CTSOP43234 321 aaPredicted RBP8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 PDX1P52945 283 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 ARID5AQ03989 594 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 TGIF1Q15583 401 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 SNRNP35Q16560 246 aaKnown RBP8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 BMT2Q1RMZ1 405 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 ZSCAN23Q3MJ62 389 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 C4orf17Q53FE4 359 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 DESI1Q6ICB0 168 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 NAPEPLDQ6IQ20 393 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 BHLHA9Q7RTU4 235 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 CCDC186Q7Z3E2 898 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 MFSD2AQ8NA29 543 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 SKA1Q96BD8 255 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 APOLD1Q96LR9 279 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 VRTNQ9H8Y1 702 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 FBRSQ9HAH7 460 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 CLIC5Q9NZA1 410 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 TJP2Q9UDY2 1190 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 NCKAP1Q9Y2A7 1128 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 USP3Q9Y6I4 520 aa8.84□□□□□ -0.99
HMGB1P39-201ENST00000366304 GOLGA6L7A0A1B0GV03 622 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 SLC12A8A0AV02 714 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 LRRC72A6NJI9 287 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 CLIC2O15247 247 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 NEBLO76041 1014 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 CYBBP04839 570 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 FAM200BP0CF97 657 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 IDEP14735 1019 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 VAV1P15498 845 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 ATICP31939 592 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 LONP1P36776 959 aaKnown RBP8.83□□□□□ -1
HMGB1P39-201ENST00000366304 COG7P83436 770 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 DAB2P98082 770 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 PDE4CQ08493 712 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 TRPC3Q13507 836 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 CLCA4Q14CN2 919 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 SURF1Q15526 300 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 TRIP4Q15650 581 aaPredicted RBP8.83□□□□□ -1
HMGB1P39-201ENST00000366304 HNRNPA1L2Q32P51 320 aaKnown RBP8.83□□□□□ -1
HMGB1P39-201ENST00000366304 POM121L1PQ3SYA9 428 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 SPOPLQ6IQ16 392 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 MMS22LQ6ZRQ5 1243 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 CLEC14AQ86T13 490 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 CYP4X1Q8N118 509 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 OR14C36Q8NHC7 312 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 RASSF8Q8NHQ8 419 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 WFIKKN2Q8TEU8 576 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 GOLGA1Q92805 767 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 TNIP3Q96KP6 325 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 CCNL2Q96S94 520 aaPredicted RBP8.83□□□□□ -1
HMGB1P39-201ENST00000366304 DCLK3Q9C098 648 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 AGPAT3Q9NRZ7 376 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 PANK4Q9NVE7 773 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 EVA1BQ9NVM1 165 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 MARCH2Q9P0N8 246 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 CYTH4Q9UIA0 394 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 ATXN7L1Q9ULK2 861 aaPredicted RBP8.83□□□□□ -1
HMGB1P39-201ENST00000366304 FZD4Q9ULV1 537 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 PCDHA5Q9Y5H7 936 aa8.83□□□□□ -1
HMGB1P39-201ENST00000366304 SPENQ96T58 3664 aaKnown RBP8.82□□□□□ -1
HMGB1P39-201ENST00000366304 KIAA0391O15091 583 aaKnown RBP8.82□□□□□ -1
HMGB1P39-201ENST00000366304 RTN2O75298 545 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 KRT38O76015 456 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 C4BPAP04003 597 aaKnown RBP8.82□□□□□ -1
HMGB1P39-201ENST00000366304 GOT1P17174 413 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 SLC6A4P31645 630 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 ASPAP45381 313 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 PSMD8P48556 350 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 CYP2J2P51589 502 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 CYP4F2P78329 520 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 ALCAMQ13740 583 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 DRAP1Q14919 205 aaPredicted RBP8.82□□□□□ -1
HMGB1P39-201ENST00000366304 TBR1Q16650 682 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 ZNF699Q32M78 642 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 MPPE1Q53F39 396 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 RFWD3Q6PCD5 774 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 CRTC1Q6UUV9 634 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 EPM2AIP1Q7L775 607 aaPredicted RBP8.82□□□□□ -1
HMGB1P39-201ENST00000366304 AHI1Q8N157 1196 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 STK40Q8N2I9 435 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 OXR1Q8N573 874 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 IFI44Q8TCB0 444 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 MAPK15Q8TD08 544 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 HTR3CQ8WXA8 447 aa8.82□□□□□ -1
HMGB1P39-201ENST00000366304 SYAP1Q96A49 352 aaPredicted RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms