RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 CHSY1Q86X52 802 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.15□□□□□ -1.75
LIG4-201ENST00000356922 ARHGAP12Q8IWW6 846 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 ETFBKMTQ8IXQ9 262 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 PHTF2Q8N3S3 785 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 KCTD6Q8NC69 237 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 DDI1Q8WTU0 396 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 ATG4AQ8WYN0 398 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 PLD4Q96BZ4 506 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 TMA16Q96EY4 203 aaKnown RBP4.15□□□□□ -1.75
LIG4-201ENST00000356922 RPRD1AQ96P16 312 aaPredicted RBP4.15□□□□□ -1.75
LIG4-201ENST00000356922 ACOX2Q99424 681 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 HINFPQ9BQA5 517 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 TRMT61BQ9BVS5 477 aaKnown RBP4.15□□□□□ -1.75
LIG4-201ENST00000356922 OSBPL2Q9H1P3 480 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 OR51B4Q9Y5P0 310 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 J3KR12 359 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 K7ERQ8 282 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 KCNK3O14649 394 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 SNAP91O60641 907 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 TULP3O75386 442 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 FGF19O95750 216 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 PENKP01210 267 aaPredicted RBP4.15□□□□□ -1.75
LIG4-201ENST00000356922 CHRM1P11229 460 aaPredicted RBP4.15□□□□□ -1.75
LIG4-201ENST00000356922 TCF3P15923 654 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 GBP1P32455 592 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 KLF1Q13351 362 aaPredicted RBP4.15□□□□□ -1.75
LIG4-201ENST00000356922 FZD5Q13467 585 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 RUNX3Q13761 415 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 C5orf22Q49AR2 442 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 BRMS1LQ5PSV4 323 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 NUGGCQ68CJ6 796 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 RNF43Q68DV7 783 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 NCBP2-AS2Q69YL0 99 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 PPP1R2P3Q6NXS1 205 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 PKN3Q6P5Z2 889 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 CREG2Q8IUH2 290 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 RHOT1Q8IXI2 618 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 GLIS1Q8NBF1 620 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 OR7D4Q8NG98 312 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 RPL10LQ96L21 214 aaKnown RBP4.15□□□□□ -1.75
LIG4-201ENST00000356922 BBS2Q9BXC9 721 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 RBM12Q9NTZ6 932 aaKnown RBP4.15□□□□□ -1.75
LIG4-201ENST00000356922 RRN3Q9NYV6 651 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 AMFRQ9UKV5 643 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 CACNA1HO95180 2353 aa4.15□□□□□ -1.75
LIG4-201ENST00000356922 MIA3Q5JRA6 1907 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 COL4A2P08572 1712 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 hCG_1818297A0A087WSY0 165 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 ZRANB2O95218 330 aaKnown RBP eCLIP4.14□□□□□ -1.75
LIG4-201ENST00000356922 VAV1P15498 845 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 SLC1A1P43005 524 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 GALK1P51570 392 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 C1orf228Q6PIY5 440 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 LINGO4Q6UY18 593 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 SPOCD1Q6ZMY3 1216 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 ADIPOR2Q86V24 386 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 UNC45BQ8IWX7 931 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 KATNAL2Q8IYT4 538 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 ZNF687Q8N1G0 1237 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 ZNF366Q8N895 744 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 TRIM58Q8NG06 486 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 ATXN2LQ8WWM7 1075 aaKnown RBP4.14□□□□□ -1.75
LIG4-201ENST00000356922 AZIN2Q96A70 460 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 FAF2Q96CS3 445 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 RNF157Q96PX1 679 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 LGMNQ99538 433 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 CEP41Q9BYV8 373 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 SLC39A8Q9C0K1 460 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 BRD9Q9H8M2 597 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 ABCB8Q9NUT2 735 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 DTLQ9NZJ0 730 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 SLCO3A1Q9UIG8 710 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 FBXO10Q9UK96 956 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 NYNRINQ9P2P1 1898 aaKnown RBP4.14□□□□□ -1.75
LIG4-201ENST00000356922 GPR179Q6PRD1 2367 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 CHD5Q8TDI0 1954 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 SOBPA7XYQ1 873 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 ESPNB1AK53 854 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 K7EQS6 105 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 CHADO15335 359 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 SMAD6O43541 496 aaKnown RBP4.14□□□□□ -1.75
LIG4-201ENST00000356922 PI15O43692 258 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 MFSD11O43934 449 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 CST8O60676 142 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 ZNF821O75541 412 aaPredicted RBP4.14□□□□□ -1.75
LIG4-201ENST00000356922 PEX11BO96011 259 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 APOEP02649 317 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 KRT1P04264 644 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 GLULP15104 373 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 CTNNA2P26232 953 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 SLC11A2P49281 568 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 STK19P49842 368 aaPredicted RBP4.14□□□□□ -1.75
LIG4-201ENST00000356922 LMAN2Q12907 356 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 GAS6Q14393 721 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 EFHC2Q5JST6 749 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 LRRC38Q5VT99 294 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 PAPD7Q5XG87 772 aaKnown RBP4.14□□□□□ -1.75
LIG4-201ENST00000356922 GJD3Q8N144 294 aa4.14□□□□□ -1.75
LIG4-201ENST00000356922 CARNMT1Q8N4J0 409 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms