RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 LRP6O75581 1613 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 LAG3P18627 525 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 KIF2BQ8N4N8 673 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 CCDC90BQ9GZT6 254 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 CILPO75339 1184 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 GLUD1P00367 558 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 ATP4AP20648 1035 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 SERPINH1P50454 418 aaKnown RBP15.21■□□□□ 0.03
COL17A1-201ENST00000353479 SH3BGRP55822 239 aaPredicted RBP15.21■□□□□ 0.03
COL17A1-201ENST00000353479 AGGF1Q8N302 714 aaeCLIP15.21■□□□□ 0.036e-6■■■■□ 21.7
COL17A1-201ENST00000353479 ATAD1Q8NBU5 361 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 IFRD1O00458 451 aaPredicted RBP15.21■□□□□ 0.02
COL17A1-201ENST00000353479 LIASO43766 372 aa15.21■□□□□ 0.02
COL17A1-201ENST00000353479 EFCAB14O75071 495 aa15.21■□□□□ 0.02
COL17A1-201ENST00000353479 C22orf31O95567 290 aa15.21■□□□□ 0.02
COL17A1-201ENST00000353479 MPOP05164 745 aa15.21■□□□□ 0.02
COL17A1-201ENST00000353479 TAS2R40P59535 323 aa15.21■□□□□ 0.02
COL17A1-201ENST00000353479 FBXL19Q6PCT2 694 aa15.21■□□□□ 0.02
COL17A1-201ENST00000353479 SETD3Q86TU7 594 aaPredicted RBP15.21■□□□□ 0.02
COL17A1-201ENST00000353479 PSTKQ8IV42 348 aaKnown RBP15.21■□□□□ 0.02
COL17A1-201ENST00000353479 OR52K1Q8NGK4 314 aa15.21■□□□□ 0.02
COL17A1-201ENST00000353479 FAM162AQ96A26 154 aa15.21■□□□□ 0.02
COL17A1-201ENST00000353479 FGFR1P11362 822 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 GABRR2P28476 465 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 HALP42357 657 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 NME5P56597 212 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 POLR2LP62875 67 aaKnown RBP15.2■□□□□ 0.02
COL17A1-201ENST00000353479 WASHC5Q12768 1159 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 N4BP2L1Q5TBK1 243 aaPredicted RBP15.2■□□□□ 0.02
COL17A1-201ENST00000353479 PPP4R4Q6NUP7 873 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 ZNF557Q8N988 423 aaPredicted RBP15.2■□□□□ 0.02
COL17A1-201ENST00000353479 PHF21BQ96EK2 531 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 FAR2Q96K12 515 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 HEY2Q9UBP5 337 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 FAM32AQ9Y421 112 aaKnown RBP15.2■□□□□ 0.02
COL17A1-201ENST00000353479 BTNL10A8MVZ5 291 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 AKAP10O43572 662 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 ALOX15P16050 662 aaPredicted RBP15.2■□□□□ 0.02
COL17A1-201ENST00000353479 PEX19P40855 299 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 DOK6Q6PKX4 331 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 TMEM159Q96B96 161 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 NSL1Q96IY1 281 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 GMLQ99445 158 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 TM6SF2Q9BZW4 377 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 NMRK1Q9NWW6 199 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 NCKIPSDQ9NZQ3 722 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 WRAP73Q9P2S5 460 aaPredicted RBP15.2■□□□□ 0.02
COL17A1-201ENST00000353479 PNMA8BQ9ULN7 279 aaPredicted RBP15.2■□□□□ 0.02
COL17A1-201ENST00000353479 ARL5CA6NH57 179 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 FGBP02675 491 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 TPBGLP0DKB5 382 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 CCNB1P14635 433 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 HNRNPH3P31942 346 aaKnown RBP15.2■□□□□ 0.02
COL17A1-201ENST00000353479 SERPINB5P36952 375 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 PTPN20Q4JDL3 420 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 CPNE1Q99829 537 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 CCT8L1PA6NM43 557 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 RNF225M0QZC1 329 aaPredicted RBP15.2■□□□□ 0.02
COL17A1-201ENST00000353479 KRT16P08779 473 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 MON1AQ86VX9 555 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 ZCCHC9Q8N567 271 aaKnown RBP15.2■□□□□ 0.02
COL17A1-201ENST00000353479 CAPN10Q9HC96 672 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 GDF3Q9NR23 364 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 ITM2BQ9Y287 266 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 PDZK1P1A8MUH7 402 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 EVPLLA8MZ36 301 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 PCNAP12004 261 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 NFKB1P19838 968 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 SEL1L3Q68CR1 1132 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 NETO2Q8NC67 525 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 SPPL2BQ8TCT7 592 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 ZNF670Q9BS34 389 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 LHX5Q9H2C1 402 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 PRDM12Q9H4Q4 367 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.2■□□□□ 0.02
COL17A1-201ENST00000353479 NCKAP1Q9Y2A7 1128 aa15.2■□□□□ 0.02
COL17A1-201ENST00000353479 A0A1W2PQH9 124 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 MYO1GB0I1T2 1018 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 CRADDP78560 199 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 LCLAT1Q6UWP7 414 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 NAF1Q96HR8 494 aaKnown RBP15.19■□□□□ 0.02
COL17A1-201ENST00000353479 WARS2Q9UGM6 360 aaKnown RBP15.19■□□□□ 0.02
COL17A1-201ENST00000353479 ARFGEF2Q9Y6D5 1785 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 TM9SF1O15321 606 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 CCNT2O60583 730 aaKnown RBP15.19■□□□□ 0.02
COL17A1-201ENST00000353479 STAU1O95793 577 aaKnown RBP15.19■□□□□ 0.02
COL17A1-201ENST00000353479 PDHA1P08559 390 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 ERCC2P18074 760 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 FMO4P31512 558 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 POM121L1PQ3SYA9 428 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 USP45Q70EL2 814 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 MAB21L3Q8N8X9 362 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 CPXM1Q96SM3 734 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 TAS2R13Q9NYV9 303 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 SNX5Q9Y5X3 404 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 PDE2AO00408 941 aaPredicted RBP15.19■□□□□ 0.02
COL17A1-201ENST00000353479 BUD23O43709 281 aaKnown RBP15.19■□□□□ 0.02
COL17A1-201ENST00000353479 NUDT2P50583 147 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 ZNF697Q5TEC3 545 aa15.19■□□□□ 0.02
COL17A1-201ENST00000353479 NDRG1Q92597 394 aaKnown RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms