RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 GJA8P48165 433 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 KCNC4Q03721 635 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 LSM12Q3MHD2 195 aaKnown RBP6.95□□□□□ -1.3
VPS39-202ENST00000348544 CCDC92Q53HC0 331 aaPredicted RBP6.95□□□□□ -1.3
VPS39-202ENST00000348544 METTL21CQ5VZV1 264 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 STEAP4Q687X5 459 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 HMBOX1Q6NT76 420 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 RSBN1LQ6PCB5 846 aaPredicted RBP6.95□□□□□ -1.3
VPS39-202ENST00000348544 GPR141Q7Z602 305 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 CMC1Q7Z7K0 106 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 SLC4A11Q8NBS3 891 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 DEPTORQ8TB45 409 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 HM13Q8TCT9 377 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 TRPC4APQ8TEL6 797 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 CLEC4DQ8WXI8 215 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 KCNN1Q92952 543 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 BORCS5Q969J3 196 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 SLCO4A1Q96BD0 722 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 MARK4Q96L34 752 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 RNF157Q96PX1 679 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 RPF2Q9H7B2 306 aaKnown RBP6.95□□□□□ -1.3
VPS39-202ENST00000348544 CLK4Q9HAZ1 481 aaKnown RBP6.95□□□□□ -1.3
VPS39-202ENST00000348544 CYP26B1Q9NR63 512 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 VPS45Q9NRW7 570 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 GPATCH2LQ9NWQ4 482 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 PPP1R1BQ9UD71 204 aaPredicted RBP6.95□□□□□ -1.3
VPS39-202ENST00000348544 TMX2Q9Y320 296 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 CDY2AQ9Y6F7 541 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 CDY1Q9Y6F8 540 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 ADGRA2Q96PE1 1338 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 WDR81Q562E7 1941 aa6.95□□□□□ -1.3
VPS39-202ENST00000348544 SOBPA7XYQ1 873 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 C9IYK1 514 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 F5H423 210 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 G3V2L1 256 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 H3BMQ9 156 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 HTRA2O43464 458 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 GNAO1P09471 354 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 GSTT2P0CG29 244 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 GSTT2BP0CG30 244 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 CCDC130P13994 396 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 HMOX2P30519 316 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 HOXA10P31260 410 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 JAK3P52333 1124 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 DPYSQ14117 519 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 STILQ15468 1287 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 ZNF829Q3KNS6 432 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 ZBED5Q49AG3 693 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 FGD3Q5JSP0 725 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 KRT80Q6KB66 452 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 RWDD4Q6NW29 188 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 FAM47BQ8NA70 645 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TDRD5Q8NAT2 981 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 RP9Q8TA86 221 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 ATP2A3Q93084 1043 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 COG8Q96MW5 612 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 CIB1Q99828 191 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 GPATCH1Q9BRR8 931 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 ANKRD60Q9BZ19 345 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 NAA50Q9GZZ1 169 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 PCDHAC1Q9H158 963 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 HIPK3Q9H422 1215 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 PIH1D1Q9NWS0 290 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 TRNAU1APQ9NX07 287 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 SPATA7Q9P0W8 599 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 FADS3Q9Y5Q0 445 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 CROCCQ5TZA2 2017 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TANC1Q9C0D5 1861 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 BCLAF3A2AJT9 711 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 FAM155AB1AL88 458 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 J3QRK9 145 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 LTFP02788 710 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 JUNP05412 331 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 ZNF12P17014 697 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 UGT1A6P19224 532 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 UGT1A1P22309 533 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 UGT1A4P22310 534 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 UGT1A3P35503 534 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 UGT1A5P35504 534 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TNFSF9P41273 254 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 GRM5P41594 1212 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 NUBP1P53384 320 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 C21orf59P57076 290 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 ORC1Q13415 861 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 ATP1A4Q13733 1029 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TFDP2Q14188 446 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 BCL2A1Q16548 175 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 INSCQ1MX18 579 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 C15orf59Q2T9L4 293 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 FAM47CQ5HY64 1035 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 NHSL2Q5HYW2 709 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 AARS2Q5JTZ9 985 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 ZBTB46Q86UZ6 589 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 PCDH19Q8TAB3 1148 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 FAM110BQ8TC76 370 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 CHPT1Q8WUD6 406 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 CHURC1Q8WUH1 139 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 FBXL8Q96CD0 374 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 PIWIL1Q96J94 861 aaKnown RBP6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms