RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 PRDM16Q9HAZ2 1276 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 OR12D3Q9UGF7 316 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 HTTP42858 3142 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 ENTPD5O75356 428 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 POLBP06746 335 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 KCNA4P22459 653 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 CNTFP26441 200 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 CD68P34810 354 aaPredicted RBP19.84■□□□□ 0.77
COL9A3-201ENST00000343916 PSEN1P49768 467 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 SCAPQ12770 1279 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 FASTKD1Q53R41 847 aaKnown RBP19.84■□□□□ 0.77
COL9A3-201ENST00000343916 RFWD3Q6PCD5 774 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 RASAL3Q86YV0 1011 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 SMARCD1Q96GM5 515 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 NSL1Q96IY1 281 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 DENND2DQ9H6A0 471 aaPredicted RBP19.84■□□□□ 0.77
COL9A3-201ENST00000343916 UBP1Q9NZI7 540 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 CDH9Q9ULB4 789 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 MRPL42Q9Y6G3 142 aaKnown RBP19.84■□□□□ 0.77
COL9A3-201ENST00000343916 TRPM7Q96QT4 1865 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 C9IYK1 514 aa19.83■□□□□ 0.77
COL9A3-201ENST00000343916 CCDC22O60826 627 aa19.83■□□□□ 0.77
COL9A3-201ENST00000343916 LYPLA1O75608 230 aaPredicted RBP19.83■□□□□ 0.77
COL9A3-201ENST00000343916 B3GAT3O94766 335 aa19.83■□□□□ 0.77
COL9A3-201ENST00000343916 CPA2P48052 419 aa19.83■□□□□ 0.77
COL9A3-201ENST00000343916 AQP5P55064 265 aa19.83■□□□□ 0.77
COL9A3-201ENST00000343916 GJA9P57773 515 aa19.83■□□□□ 0.77
COL9A3-201ENST00000343916 RINLQ6ZS11 566 aa19.83■□□□□ 0.77
COL9A3-201ENST00000343916 DNAAF3Q8N9W5 541 aa19.83■□□□□ 0.77
COL9A3-201ENST00000343916 TTC8Q8TAM2 541 aa19.83■□□□□ 0.77
COL9A3-201ENST00000343916 CERS2Q96G23 380 aa19.83■□□□□ 0.77
COL9A3-201ENST00000343916 CELF6Q96J87 481 aaKnown RBP19.83■□□□□ 0.77
COL9A3-201ENST00000343916 PEX11AO75192 247 aa19.83■□□□□ 0.76
COL9A3-201ENST00000343916 DUSP11O75319 330 aaKnown RBP19.83■□□□□ 0.76
COL9A3-201ENST00000343916 SNNO75324 88 aaPredicted RBP19.83■□□□□ 0.76
COL9A3-201ENST00000343916 LRIG2O94898 1065 aa19.83■□□□□ 0.76
COL9A3-201ENST00000343916 IGHA2P01877 340 aa19.83■□□□□ 0.76
COL9A3-201ENST00000343916 FAM163BP0C2L3 166 aa19.83■□□□□ 0.76
COL9A3-201ENST00000343916 PPIDQ08752 370 aaKnown RBP19.83■□□□□ 0.76
COL9A3-201ENST00000343916 CCNJLQ8IV13 435 aa19.83■□□□□ 0.76
COL9A3-201ENST00000343916 KCNV2Q8TDN2 545 aa19.83■□□□□ 0.76
COL9A3-201ENST00000343916 TMEM209Q96SK2 561 aa19.83■□□□□ 0.76
COL9A3-201ENST00000343916 MTG1Q9BT17 334 aaPredicted RBP19.83■□□□□ 0.76
COL9A3-201ENST00000343916 TMLHEQ9NVH6 421 aa19.83■□□□□ 0.76
COL9A3-201ENST00000343916 KCNK4Q9NYG8 393 aa19.83■□□□□ 0.76
COL9A3-201ENST00000343916 TXNDC16Q9P2K2 825 aa19.83■□□□□ 0.76
COL9A3-201ENST00000343916 VANGL2Q9ULK5 521 aa19.83■□□□□ 0.76
COL9A3-201ENST00000343916 ITM2AO43736 263 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 MGEA5O60502 916 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 ABCG1P45844 678 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 STX3Q13277 289 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 ARL13BQ3SXY8 428 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 CMC1Q7Z7K0 106 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 CRLF3Q8IUI8 442 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 PPP1R14CQ8TAE6 165 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 AZIN2Q96A70 460 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 ZNF669Q96BR6 464 aaPredicted RBP19.82■□□□□ 0.76
COL9A3-201ENST00000343916 AGAP2Q99490 1192 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 EBF4Q9BQW3 602 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 BTBD10Q9BSF8 475 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 TLE6Q9H808 572 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 ZNF358Q9NW07 568 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 H0Y3Z8 333 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 ATP9BO43861 1147 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 CAPN15O75808 1086 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 AP2A1O95782 977 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 CD52P31358 61 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 AIF1P55008 147 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 CERCAMQ5T4B2 595 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 KYAT3Q6YP21 454 aaKnown RBP19.82■□□□□ 0.76
COL9A3-201ENST00000343916 PDZD4Q76G19 769 aaPredicted RBP19.82■□□□□ 0.76
COL9A3-201ENST00000343916 TAC4Q86UU9 113 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 MAB21L3Q8N8X9 362 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 MFSD3Q96ES6 412 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 PGAP3Q96FM1 320 aaPredicted RBP19.82■□□□□ 0.76
COL9A3-201ENST00000343916 NAT9Q9BTE0 207 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 PPARGC1AQ9UBK2 798 aaKnown RBP19.82■□□□□ 0.76
COL9A3-201ENST00000343916 HBS1LQ9Y450 684 aaKnown RBP19.82■□□□□ 0.76
COL9A3-201ENST00000343916 PTCH2Q9Y6C5 1203 aa19.82■□□□□ 0.76
COL9A3-201ENST00000343916 F8W810 466 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 BIRC5O15392 142 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 GYG2O15488 501 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 WFS1O76024 890 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 NEBLO76041 1014 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 SRGAP2BP0DMP2 458 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 ESRRAP11474 423 aaPredicted RBP19.81■□□□□ 0.76
COL9A3-201ENST00000343916 GARSP41250 739 aaKnown RBP19.81■□□□□ 0.76
COL9A3-201ENST00000343916 RSPH3Q86UC2 560 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 SCAMP5Q8TAC9 235 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 RNF34Q969K3 372 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 MLPHQ9BV36 600 aaPredicted RBP19.81■□□□□ 0.76
COL9A3-201ENST00000343916 TAS2R1Q9NYW7 299 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 INPP5FQ9Y2H2 1132 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 SCN10AQ9Y5Y9 1956 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 PRKCGP05129 697 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 TPH1P17752 444 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 NFKB1P19838 968 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 CALB2P22676 271 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 PCSK1P29120 753 aa19.81■□□□□ 0.76
COL9A3-201ENST00000343916 TYK2P29597 1187 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms