RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 KLK7P49862 253 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 NOVA1P51513 510 aaKnown RBP20.8■□□□□ 0.92
SYNE2-201ENST00000341472 COPB1P53618 953 aaKnown RBP20.8■□□□□ 0.92
SYNE2-201ENST00000341472 MYL5Q02045 173 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 ARID5BQ14865 1188 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 CCDC183Q5T5S1 534 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 DCAF12L1Q5VU92 463 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 ZNF776Q68DI1 518 aaPredicted RBP20.8■□□□□ 0.92
SYNE2-201ENST00000341472 PSAPL1Q6NUJ1 521 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 SND1Q7KZF4 910 aaKnown RBP eCLIP20.8■□□□□ 0.92
SYNE2-201ENST00000341472 ZNF677Q86XU0 584 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 XYLT1Q86Y38 959 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 CPA5Q8WXQ8 436 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 MYO19Q96H55 970 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 PCMTD1Q96MG8 357 aaPredicted RBP20.8■□□□□ 0.92
SYNE2-201ENST00000341472 SIK2Q9H0K1 926 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 MIR1-1HGQ9H1L0 117 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 PCED1AQ9H1Q7 454 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 LIMA1Q9UHB6 759 aaKnown RBP20.8■□□□□ 0.92
SYNE2-201ENST00000341472 SLCO3A1Q9UIG8 710 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 HS3ST4Q9Y661 456 aa20.8■□□□□ 0.92
SYNE2-201ENST00000341472 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.79■□□□□ 0.92
SYNE2-201ENST00000341472 A0A1B0GVM2 712 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 TARSL2A2RTX5 802 aaKnown RBP20.79■□□□□ 0.92
SYNE2-201ENST00000341472 TCAF2A6NFQ2 919 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 SIN3BO75182 1162 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 PAGE1O75459 146 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 PDGFRAP16234 1089 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 CSRP1P21291 193 aaKnown RBP20.79■□□□□ 0.92
SYNE2-201ENST00000341472 NNMTP40261 264 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 CXCR3P49682 368 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 PLK1P53350 603 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 SFSWAPQ12872 951 aaKnown RBP20.79■□□□□ 0.92
SYNE2-201ENST00000341472 ZNF177Q13360 481 aaPredicted RBP20.79■□□□□ 0.92
SYNE2-201ENST00000341472 C9orf64Q5T6V5 341 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 FAM102AQ5T9C2 384 aaPredicted RBP20.79■□□□□ 0.92
SYNE2-201ENST00000341472 SH3PXD2AQ5TCZ1 1133 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 NAA35Q5VZE5 725 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 CIR1Q86X95 450 aaPredicted RBP20.79■□□□□ 0.92
SYNE2-201ENST00000341472 DHX40Q8IX18 779 aaKnown RBP20.79■□□□□ 0.92
SYNE2-201ENST00000341472 HDDC3Q8N4P3 179 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 EPS8L1Q8TE68 723 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 GANCQ8TET4 914 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 IGSF8Q969P0 613 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 NT5C3BQ969T7 300 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 BTBD1Q9H0C5 482 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 RSPH9Q9H1X1 276 aaPredicted RBP20.79■□□□□ 0.92
SYNE2-201ENST00000341472 NLRC4Q9NPP4 1024 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 PIGVQ9NUD9 493 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 VANGL2Q9ULK5 521 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 NCKAP1Q9Y2A7 1128 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 DAAM1Q9Y4D1 1078 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 PAXBP1Q9Y5B6 917 aa20.79■□□□□ 0.92
SYNE2-201ENST00000341472 A0A1B0GTW7 788 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 FAM170AA1A519 330 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 LRRC10BA6NIK2 292 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 TTC34A8MYJ7 566 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 GOLGA8SH3BPF8 625 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 ADCY5O95622 1261 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 MZF1P28698 734 aaPredicted RBP20.78■□□□□ 0.92
SYNE2-201ENST00000341472 ACSL1P33121 698 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 SOX5P35711 763 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 STAT1P42224 750 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 SULT1E1P49888 294 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 DEUP1Q05D60 604 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 SULT2A1Q06520 285 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 SYCP1Q15431 976 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 SLC25A52Q3SY17 297 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 TTC31Q49AM3 519 aaPredicted RBP20.78■□□□□ 0.92
SYNE2-201ENST00000341472 C2CD6Q53TS8 623 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 BRMS1LQ5PSV4 323 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 C14orf80Q86SX3 495 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 PGAP3Q96FM1 320 aaPredicted RBP20.78■□□□□ 0.92
SYNE2-201ENST00000341472 SPAG5Q96R06 1193 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 TKTL2Q9H0I9 626 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 ARHGEF38Q9NXL2 777 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 SCML1Q9UN30 329 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 SIK3Q9Y2K2 1263 aa20.78■□□□□ 0.92
SYNE2-201ENST00000341472 EDDM13A0A1B0GTR0 161 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 GIPC1O14908 333 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 OPHN1O60890 802 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 CLDN11O75508 207 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 CEACAM1P13688 526 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 ZNF18P17022 549 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 TFE3P19532 575 aaPredicted RBP20.77■□□□□ 0.92
SYNE2-201ENST00000341472 NOMO3P69849 1222 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 CDR2Q01850 454 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 UBXN1Q04323 297 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 OTUD1Q5VV17 481 aaPredicted RBP20.77■□□□□ 0.92
SYNE2-201ENST00000341472 MINDY1Q8N5J2 469 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 SLC20A1Q8WUM9 679 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 RPL10LQ96L21 214 aaKnown RBP20.77■□□□□ 0.92
SYNE2-201ENST00000341472 TBCBQ99426 244 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 SLC32A1Q9H598 525 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 SGK2Q9HBY8 427 aa20.77■□□□□ 0.92
SYNE2-201ENST00000341472 EIF2B4Q9UI10 523 aaKnown RBP20.77■□□□□ 0.92
SYNE2-201ENST00000341472 NOCTQ9UK39 431 aaKnown RBP20.77■□□□□ 0.92
SYNE2-201ENST00000341472 LGALS16A8MUM7 142 aa20.76■□□□□ 0.91
SYNE2-201ENST00000341472 EPHB6O15197 1021 aa20.76■□□□□ 0.91
SYNE2-201ENST00000341472 BCAT2O15382 392 aaPredicted RBP20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms