RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ZNF682O95780 498 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 CHRM3P20309 590 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 RRM2P31350 389 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 BNIP1Q12981 228 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 KLHL12Q53G59 568 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 GRTP1Q5TC63 336 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 MRNIPQ6NTE8 343 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 KLHL17Q6TDP4 642 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 ULK2Q8IYT8 1036 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 RXFP2Q8WXD0 754 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 RERGLQ9H628 205 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 ABI2Q9NYB9 513 aaPredicted RBP11.74□□□□□ -0.53
VPS39-201ENST00000318006 ITGA11Q9UKX5 1188 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 RNF112Q9ULX5 631 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 CHKBQ9Y259 395 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 PRR23AA6NEV1 266 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 LSM1O15116 133 aaKnown RBP11.74□□□□□ -0.53
VPS39-201ENST00000318006 FESP07332 822 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 ZNF286BP0CG31 522 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 CCNA2P20248 432 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 PRKCIP41743 596 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 PRIM2P49643 509 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 TOP3AQ13472 1001 aaPredicted RBP11.74□□□□□ -0.53
VPS39-201ENST00000318006 LPIN1Q14693 890 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 C8orf59Q8N0T1 100 aaPredicted RBP11.74□□□□□ -0.53
VPS39-201ENST00000318006 ART4Q93070 314 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 DCUN1D1Q96GG9 259 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 OSMRQ99650 979 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 ASB7Q9H672 318 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 TRDMT1O14717 391 aaKnown RBP11.73□□□□□ -0.53
VPS39-201ENST00000318006 EDF1O60869 148 aaKnown RBP11.73□□□□□ -0.53
VPS39-201ENST00000318006 SLC2A3P11169 496 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 ABRAXAS1Q6UWZ7 409 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 ZDHHC13Q8IUH4 622 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 SFRP1Q8N474 314 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 FAM120BQ96EK7 910 aaKnown RBP11.73□□□□□ -0.53
VPS39-201ENST00000318006 INPP4AQ96PE3 977 aaPredicted RBP11.73□□□□□ -0.53
VPS39-201ENST00000318006 OSBPL11Q9BXB4 747 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 UGT2B28Q9BY64 529 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 KLHL31Q9H511 634 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 GPATCH2LQ9NWQ4 482 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 AAR2Q9Y312 384 aaKnown RBP11.73□□□□□ -0.53
VPS39-201ENST00000318006 PCDHAC2Q9Y5I4 1007 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 PIPSLA2A3N6 862 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 PRRG1O14668 218 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 FGFR3P22607 806 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 FBXO47Q5MNV8 452 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 C10orf120Q5SQS8 335 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 SLFN11Q7Z7L1 901 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 PRDM5Q9NQX1 630 aaPredicted RBP11.73□□□□□ -0.53
VPS39-201ENST00000318006 SETD4Q9NVD3 440 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 MOSPD1Q9UJG1 213 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 TMCC3Q9ULS5 477 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 UMODL1Q5DID0 1318 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 ANKRD63C9JTQ0 380 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 F8W810 466 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 HS6ST1O60243 411 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 SEC24AO95486 1093 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 CBX3Q13185 183 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 ZNF846Q147U1 533 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 MIIPQ5JXC2 388 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 ANKS3Q6ZW76 656 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 POC5Q8NA72 575 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 WDR18Q9BV38 432 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 TRIM39Q9HCM9 518 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 AVENQ9NQS1 362 aaPredicted RBP11.73□□□□□ -0.53
VPS39-201ENST00000318006 SELENONQ9NZV5 590 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 DNPEPQ9ULA0 475 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 BARX2Q9UMQ3 279 aaPredicted RBP11.73□□□□□ -0.53
VPS39-201ENST00000318006 USP20Q9Y2K6 914 aa11.73□□□□□ -0.53
VPS39-201ENST00000318006 C15orf38-AP3S2A0A0A6YYH1 394 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 KRT87PA6NCN2 255 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 DNM1LO00429 736 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 PMPCBO75439 489 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 PPATQ06203 517 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 GRIK4Q16099 956 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 ARPINQ7Z6K5 226 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 GALNT15Q8N3T1 639 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 ASZ1Q8WWH4 475 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 HDHD2Q9H0R4 259 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 SLCO1B3Q9NPD5 702 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 AP4E1Q9UPM8 1137 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 A0A096LPK6 155 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 A8MUI8 341 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 PDHXO00330 501 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 PARNO95453 639 aaKnown RBP11.72□□□□□ -0.53
VPS39-201ENST00000318006 MT-CO1P00395 513 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 THP07101 528 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 LYNP07948 512 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 ETS1P14921 441 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 POU1F1P28069 291 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 ADSSP30520 456 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 CSHL1Q14406 222 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 TTC23Q5W5X9 447 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 TRIM74Q86UV6 250 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 TRIM73Q86UV7 250 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 FAM131BQ86XD5 332 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 BTN2A2Q8WVV5 523 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 TNFRSF25Q93038 417 aa11.72□□□□□ -0.53
VPS39-201ENST00000318006 APOL5Q9BWW9 433 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms