RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 NTAN1Q96AB6 310 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 CCDC127Q96BQ5 260 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 ZNF689Q96CS4 500 aaPredicted RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 KLHL32Q96NJ5 620 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 TSPAN18Q96SJ8 248 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 KIFC1Q9BW19 673 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 FRMD8Q9BZ67 464 aaPredicted RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 METTL5Q9NRN9 209 aaKnown RBP8.06□□□□□ -1.12
CNOT4-201ENST00000315544 TRIM17Q9Y577 477 aa8.06□□□□□ -1.12
CNOT4-201ENST00000315544 KCNU1A8MYU2 1149 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 TMEM229AB2RXF0 380 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 C5orf67F2Z3F1 127 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 FXYD1O00168 92 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 CST8O60676 142 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 PENKP01210 267 aaPredicted RBP8.05□□□□□ -1.12
CNOT4-201ENST00000315544 VDRP11473 427 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 RBL1P28749 1068 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 PPIDQ08752 370 aaKnown RBP8.05□□□□□ -1.12
CNOT4-201ENST00000315544 HLTFQ14527 1009 aaKnown RBP eCLIP8.05□□□□□ -1.12
CNOT4-201ENST00000315544 MXD4Q14582 209 aaPredicted RBP8.05□□□□□ -1.12
CNOT4-201ENST00000315544 PDK2Q15119 407 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 CCDC70Q6NSX1 233 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 IRGCQ6NXR0 463 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 AAGABQ6PD74 315 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 C3orf62Q6ZUJ4 267 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 SLC26A11Q86WA9 606 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 RNF168Q8IYW5 571 aaPredicted RBP8.05□□□□□ -1.12
CNOT4-201ENST00000315544 LRRC52Q8N7C0 313 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 GDAP1Q8TB36 358 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 NR1H4Q96RI1 486 aaPredicted RBP8.05□□□□□ -1.12
CNOT4-201ENST00000315544 SAYSD1Q9NPB0 183 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 NR2E3Q9Y5X4 410 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.05□□□□□ -1.12
CNOT4-201ENST00000315544 A0A1B0GTW7 788 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 H0YJX3 145 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 TBC1D4O60343 1298 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 ALDH2P05091 517 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 KRT13P13646 458 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 PRKAR2AP13861 404 aaKnown RBP8.05□□□□□ -1.12
CNOT4-201ENST00000315544 CCDC130P13994 396 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 MS4A2Q01362 244 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 FRMD7Q6ZUT3 714 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 MAEAQ7L5Y9 396 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 ZDHHC17Q8IUH5 632 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 ULK2Q8IYT8 1036 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 DIS3LQ8TF46 1054 aaKnown RBP8.05□□□□□ -1.12
CNOT4-201ENST00000315544 WNT8BQ93098 351 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 IL22Q9GZX6 179 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 ZNF696Q9H7X3 374 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 PCDHB12Q9Y5F1 795 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 TCRBV3S1A0A5B6 114 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 HNRNPDLO14979 420 aaKnown RBP8.05□□□□□ -1.12
CNOT4-201ENST00000315544 AHCYL1O43865 530 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 B4GALT3O60512 393 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 PYGBP11216 843 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 NFKB2Q00653 900 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 SLC6A3Q01959 620 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 GALNT1Q10472 559 aaPredicted RBP8.05□□□□□ -1.12
CNOT4-201ENST00000315544 NAB1Q13506 487 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 DSC3Q14574 896 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 EPHX4Q8IUS5 362 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 SPNS2Q8IVW8 549 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 ZBED8Q8IZ13 594 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 KIRREL3Q8IZU9 778 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 FEM1CQ96JP0 617 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 TNKS2Q9H2K2 1166 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 RSAD1Q9HA92 442 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 C1orf112Q9NSG2 853 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 DNAJC17Q9NVM6 304 aaKnown RBP8.05□□□□□ -1.12
CNOT4-201ENST00000315544 MTRF1LQ9UGC7 380 aaKnown RBP8.05□□□□□ -1.12
CNOT4-201ENST00000315544 MTUS1Q9ULD2 1270 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 NAALAD2Q9Y3Q0 740 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 PCDHGA7Q9Y5G6 932 aa8.05□□□□□ -1.12
CNOT4-201ENST00000315544 DIAPH2O60879 1101 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 DNAJA2O60884 412 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 LMO2P25791 158 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 NSFP46459 744 aaKnown RBP8.04□□□□□ -1.12
CNOT4-201ENST00000315544 NR2C2P49116 596 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 SMAD3P84022 425 aaKnown RBP8.04□□□□□ -1.12
CNOT4-201ENST00000315544 KCNC3Q14003 757 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 TBC1D25Q3MII6 688 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 PYROXD2Q8N2H3 581 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 COPS5Q92905 334 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 TUBGCP5Q96RT8 1024 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 IL12RB2Q99665 862 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 GPR22Q99680 433 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 RHOBTB2Q9BYZ6 727 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 PDFQ9HBH1 243 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 ZNF225Q9UK10 706 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 GMEB1Q9Y692 573 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 FAM170AA1A519 330 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 THAP12O43422 761 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 UPP2O95045 317 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 SEMG1P04279 462 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 CYP11A1P05108 521 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 BGNP21810 368 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 PIK3CAP42336 1068 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 TXNL4AP83876 142 aaKnown RBP8.04□□□□□ -1.12
CNOT4-201ENST00000315544 ZBTB17Q13105 803 aa8.04□□□□□ -1.12
CNOT4-201ENST00000315544 GK3PQ14409 553 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms