RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ECT2LQ008S8 904 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 CENPCQ03188 943 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 ST3GAL2Q16842 350 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 TCP11X2Q5H9J9 407 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 KLHDC7AQ5VTJ3 777 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 TTC39BQ5VTQ0 682 aaPredicted RBP20.15■□□□□ 0.82
LIME1-201ENST00000309546 DPY19L2P1Q6NXN4 242 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 SLC26A9Q7LBE3 791 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 PIP4P1Q86T03 277 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 TMEM35BQ8NCS4 154 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 RPRD1AQ96P16 312 aaPredicted RBP20.15■□□□□ 0.82
LIME1-201ENST00000309546 ZDHHC5Q9C0B5 715 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 PCED1AQ9H1Q7 454 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 PABPC3Q9H361 631 aaKnown RBP20.15■□□□□ 0.82
LIME1-201ENST00000309546 LMBRD1Q9NUN5 540 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 NCKAP1Q9Y2A7 1128 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 A0A1B0GVM2 712 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 TCAF2A6NFQ2 919 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 FAM47DPA6NHR8 397 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 UPK3BL1B0FP48 263 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 UPK3BL2E5RIL1 263 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 FSBPO95073 299 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 TOP3BO95985 862 aaKnown RBP20.14■□□□□ 0.81
LIME1-201ENST00000309546 CD59P13987 128 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 STK19P49842 368 aaPredicted RBP20.14■□□□□ 0.81
LIME1-201ENST00000309546 SMYD5Q6GMV2 418 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 FBXL22Q6P050 247 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 SGK2Q9HBY8 427 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 SLCO3A1Q9UIG8 710 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 VANGL2Q9ULK5 521 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 ZBTB32Q9Y2Y4 487 aaPredicted RBP20.14■□□□□ 0.81
LIME1-201ENST00000309546 SLCO1B1Q9Y6L6 691 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 PCNX2A6NKB5 2137 aa20.14■□□□□ 0.81
LIME1-201ENST00000309546 ITIH6Q6UXX5 1313 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 EDDM13A0A1B0GTR0 161 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 A0A1W2PP55 124 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 MID1O15344 667 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 UCHL3P15374 230 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 MZF1P28698 734 aaPredicted RBP20.13■□□□□ 0.81
LIME1-201ENST00000309546 NOS2P35228 1153 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 MATKP42679 507 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 PSMD8P48556 350 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 SULT1E1P49888 294 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 IRAK1P51617 712 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 AUHQ13825 339 aaKnown RBP20.13■□□□□ 0.81
LIME1-201ENST00000309546 CST6Q15828 149 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 C9orf64Q5T6V5 341 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 ZDHHC17Q8IUH5 632 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 MMAAQ8IVH4 418 aaKnown RBP20.13■□□□□ 0.81
LIME1-201ENST00000309546 KDM1BQ8NB78 822 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 ZNF397Q8NF99 534 aaPredicted RBP20.13■□□□□ 0.81
LIME1-201ENST00000309546 IGSF8Q969P0 613 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 IL21RQ9HBE5 538 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 FBXL12Q9NXK8 326 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.13■□□□□ 0.81
LIME1-201ENST00000309546 STAP1Q9ULZ2 295 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 SCML1Q9UN30 329 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 HS3ST4Q9Y661 456 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 TMEM131Q92545 1883 aa20.13■□□□□ 0.81
LIME1-201ENST00000309546 MAP1BP46821 2468 aaKnown RBP20.13■□□□□ 0.81
LIME1-201ENST00000309546 TP53BP1Q12888 1972 aaPredicted RBP20.12■□□□□ 0.81
LIME1-201ENST00000309546 PLXNA2O75051 1894 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 SH3BP5O60239 455 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 PAGE1O75459 146 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 GJB3O75712 270 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 CER1O95813 267 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 C7P10643 843 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 NNMTP40261 264 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 CSNK1EP49674 416 aaKnown RBP20.12■□□□□ 0.81
LIME1-201ENST00000309546 SLC12A1Q13621 1099 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 CT47A1Q5JQC4 288 aaPredicted RBP20.12■□□□□ 0.81
LIME1-201ENST00000309546 FAM102AQ5T9C2 384 aaPredicted RBP20.12■□□□□ 0.81
LIME1-201ENST00000309546 OTUD1Q5VV17 481 aaPredicted RBP20.12■□□□□ 0.81
LIME1-201ENST00000309546 CXorf57Q6NSI4 855 aaKnown RBP20.12■□□□□ 0.81
LIME1-201ENST00000309546 CLEC17AQ6ZS10 378 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 USP30Q70CQ3 517 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 BIRC7Q96CA5 298 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 C18orf8Q96DM3 657 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 CAMK1GQ96NX5 476 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 OMDQ99983 421 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 NAA15Q9BXJ9 866 aaKnown RBP20.12■□□□□ 0.81
LIME1-201ENST00000309546 SIK2Q9H0K1 926 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 VPS16Q9H269 839 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 GAREM1Q9H706 876 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 PIGVQ9NUD9 493 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 SERGEFQ9UGK8 458 aa20.12■□□□□ 0.81
LIME1-201ENST00000309546 A0A1B0GVT2 93 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 TARSL2A2RTX5 802 aaKnown RBP20.11■□□□□ 0.81
LIME1-201ENST00000309546 F8VZ95 297 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 GOLGA8SH3BPF8 625 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 RNASEH2AO75792 299 aaKnown RBP20.11■□□□□ 0.81
LIME1-201ENST00000309546 TFE3P19532 575 aaPredicted RBP20.11■□□□□ 0.81
LIME1-201ENST00000309546 CDH5P33151 784 aaPredicted RBP20.11■□□□□ 0.81
LIME1-201ENST00000309546 FAM193AP78312 1265 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 BNC1Q01954 994 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 SLC14A1Q13336 389 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 ARID5BQ14865 1188 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 C2CD6Q53TS8 623 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 IL27RAQ6UWB1 636 aa20.11■□□□□ 0.81
LIME1-201ENST00000309546 LRSAM1Q6UWE0 723 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms