RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CEP83Q9Y592 693 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 ITIH6Q6UXX5 1313 aa15.31■□□□□ 0.04
CCDC88B-201ENST00000301897 CFAP46Q8IYW2 2715 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 GOLGA6L7A0A1B0GV03 622 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 A0A1W2PQ27 194 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 A0A1W2PQ64 194 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 MAGEC1O60732 1142 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 C5AR1P21730 350 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 SLC8A1P32418 973 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 NNMTP40261 264 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 ECT2LQ008S8 904 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 C19orf57Q0VDD7 668 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 COBLL1Q53SF7 1204 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 PITRM1Q5JRX3 1037 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 PMF1Q6P1K2 205 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 GATAD2AQ86YP4 633 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 CACTIN-AS1Q8N1I8 211 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 CARNMT1Q8N4J0 409 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 UBR7Q8N806 425 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 LSM14AQ8ND56 463 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 BAP1Q92560 729 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 SERAC1Q96JX3 654 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 MRGPRX3Q96LB0 322 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 SCAND2PQ9GZW5 306 aaPredicted RBP15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 KDM4CQ9H3R0 1056 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 SERGEFQ9UGK8 458 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 ARMCX3Q9UH62 379 aaPredicted RBP15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 INTS6Q9UL03 887 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 ATP6V1DQ9Y5K8 247 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 AK5Q9Y6K8 562 aa15.3■□□□□ 0.04
CCDC88B-201ENST00000301897 A0A1W2PR77 199 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 C10orf142B7Z368 130 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 M0QYV0 167 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 TLR4O00206 839 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 ZNF202O95125 648 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 LUC7L3O95232 432 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 WNT1P04628 370 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 EPHA8P29322 1005 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 EIF2S3P41091 472 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 RXRGP48443 463 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 ACADVLP49748 655 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 RGS7P49802 495 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 RPS24P62847 133 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 OVGP1Q12889 678 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 SLC12A1Q13621 1099 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 KCNJ12Q14500 433 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 ELAVL3Q14576 367 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 RTP5Q14D33 572 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 MS4A13Q5J8X5 152 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 NADSYN1Q6IA69 706 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 TMEM270Q6UE05 265 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 BEND5Q7L4P6 421 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 IQCHQ86VS3 1027 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 OR14C36Q8NHC7 312 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 PIP4K2CQ8TBX8 421 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 TSC1Q92574 1164 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 PRICKLE1Q96MT3 831 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 MTG2Q9H4K7 406 aa15.29■□□□□ 0.04
CCDC88B-201ENST00000301897 MYLKQ15746 1914 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 TTC34A8MYJ7 566 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 PMM2O15305 246 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 LATO43561 262 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 APOEP02649 317 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 PSMD8P48556 350 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 ADPRHP54922 357 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 OXCT1P55809 520 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 NXPH1P58417 271 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 NUCB2P80303 420 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 SEMG2Q02383 582 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 LRRC63Q05C16 580 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 SULT2A1Q06520 285 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 CETN1Q12798 172 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 SHBQ15464 509 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 HES3Q5TGS1 186 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 NAPEPLDQ6IQ20 393 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 FBXL19Q6PCT2 694 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 DSG4Q86SJ6 1040 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 PRPF39Q86UA1 669 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 EID2Q8N6I1 236 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 MFSD2AQ8NA29 543 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 SNIP1Q8TAD8 396 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 DQX1Q8TE96 717 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 TFAP2BQ92481 460 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 SLC35C1Q96A29 364 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 FCRL2Q96LA5 508 aaPredicted RBP15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 NT5C1BQ96P26 610 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 PPP1R9BQ96SB3 815 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 FAM129BQ96TA1 746 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 EBF2Q9HAK2 575 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 METTL14Q9HCE5 456 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 PCDHB4Q9Y5E5 795 aa15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 NYNRINQ9P2P1 1898 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-201ENST00000301897 TBC1D3DA0A087WVF3 549 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 TBC1D3IA0A087WXS9 549 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 TBC1D3EA0A087X179 549 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 TBC1D3KA0A087X1G2 549 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 TBC1D3FA6NER0 549 aaPredicted RBP15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 TBC1D3LB9A6J9 549 aa15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 ATXN7O15265 892 aaPredicted RBP15.27■□□□□ 0.04
CCDC88B-201ENST00000301897 SLC7A4O43246 635 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms