RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 CASP8AP2Q9UKL3 1982 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 ARHGEF37A1IGU5 675 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 ERI2A8K979 691 aaKnown RBP24.56■■□□□ 1.52
TRIM54-201ENST00000296098 ZBTB24O43167 697 aaPredicted RBP24.56■■□□□ 1.52
TRIM54-201ENST00000296098 YY1P25490 414 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 TMPRSS15P98073 1019 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 ZBTB17Q13105 803 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 OLIG2Q13516 323 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 CCSAPQ6IQ19 270 aaPredicted RBP24.56■■□□□ 1.52
TRIM54-201ENST00000296098 ZNF449Q6P9G9 518 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 DCLRE1AQ6PJP8 1040 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 LRRTM3Q86VH5 581 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 RAB3IL1Q8TBN0 382 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 SUSD3Q96L08 255 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 C7orf26Q96N11 449 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 TMEM237Q96Q45 408 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 ZIC5Q96T25 663 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 ZFATQ9P243 1243 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 RPS6KL1Q9Y6S9 549 aa24.56■■□□□ 1.52
TRIM54-201ENST00000296098 DLDP09622 509 aaKnown RBP24.55■■□□□ 1.52
TRIM54-201ENST00000296098 CST5P28325 142 aaPredicted RBP24.55■■□□□ 1.52
TRIM54-201ENST00000296098 SLC8A1P32418 973 aa24.55■■□□□ 1.52
TRIM54-201ENST00000296098 NUDCD3Q8IVD9 361 aa24.55■■□□□ 1.52
TRIM54-201ENST00000296098 CERS2Q96G23 380 aa24.55■■□□□ 1.52
TRIM54-201ENST00000296098 VAT1Q99536 393 aa24.55■■□□□ 1.52
TRIM54-201ENST00000296098 LRRC40Q9H9A6 602 aa24.55■■□□□ 1.52
TRIM54-201ENST00000296098 KCNK13Q9HB14 408 aa24.55■■□□□ 1.52
TRIM54-201ENST00000296098 VANGL2Q9ULK5 521 aa24.55■■□□□ 1.52
TRIM54-201ENST00000296098 CCDC195A0A1B0GUA6 201 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 BIRC5O15392 142 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 CBX6O95503 412 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 ALDOAP04075 364 aaKnown RBP24.54■■□□□ 1.52
TRIM54-201ENST00000296098 ITGB1P05556 798 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 T-ENOLP0DO92 83 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 CD68P34810 354 aaPredicted RBP24.54■■□□□ 1.52
TRIM54-201ENST00000296098 BST1Q10588 318 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 CHI3L2Q15782 390 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 BEND5Q7L4P6 421 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 CCDC91Q7Z6B0 441 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 SAR1AQ9NR31 198 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 TRMT13Q9NUP7 481 aaKnown RBP24.54■■□□□ 1.52
TRIM54-201ENST00000296098 HEY2Q9UBP5 337 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 PSAT1Q9Y617 370 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 TPP1O14773 563 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 USP12O75317 370 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 IGLV3-25P01717 112 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 PRKAR2AP13861 404 aaKnown RBP24.54■■□□□ 1.52
TRIM54-201ENST00000296098 TYMPP19971 482 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 CYP2C18P33260 490 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 RASSF2P50749 326 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 TRIM71Q2Q1W2 868 aaKnown RBP24.54■■□□□ 1.52
TRIM54-201ENST00000296098 TEX44Q53QW1 395 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 FAM26DQ5JW98 314 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 KCTD11Q693B1 232 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 KYAT3Q6YP21 454 aaKnown RBP24.54■■□□□ 1.52
TRIM54-201ENST00000296098 OSBPL2Q9H1P3 480 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 CASS4Q9NQ75 786 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 BFARQ9NZS9 450 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 TXNDC16Q9P2K2 825 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 NUMBLQ9Y6R0 609 aa24.54■■□□□ 1.52
TRIM54-201ENST00000296098 SHROOM3Q8TF72 1996 aa24.53■■□□□ 1.52
TRIM54-201ENST00000296098 THSD7BQ9C0I4 1608 aa24.53■■□□□ 1.52
TRIM54-201ENST00000296098 BPGMP07738 259 aa24.53■■□□□ 1.52
TRIM54-201ENST00000296098 ITGA2BP08514 1039 aa24.53■■□□□ 1.52
TRIM54-201ENST00000296098 NFKB1P19838 968 aa24.53■■□□□ 1.52
TRIM54-201ENST00000296098 STXBP5Q5T5C0 1151 aa24.53■■□□□ 1.52
TRIM54-201ENST00000296098 CES3Q6UWW8 571 aa24.53■■□□□ 1.52
TRIM54-201ENST00000296098 ZNF598Q86UK7 904 aaKnown RBP24.53■■□□□ 1.52
TRIM54-201ENST00000296098 SPATA2LQ8IUW3 424 aaPredicted RBP24.53■■□□□ 1.52
TRIM54-201ENST00000296098 DNAAF3Q8N9W5 541 aa24.53■■□□□ 1.52
TRIM54-201ENST00000296098 PCSK9Q8NBP7 692 aaKnown RBP24.53■■□□□ 1.52
TRIM54-201ENST00000296098 SCAMP5Q8TAC9 235 aa24.53■■□□□ 1.52
TRIM54-201ENST00000296098 SKA1Q96BD8 255 aa24.53■■□□□ 1.52
TRIM54-201ENST00000296098 MLPHQ9BV36 600 aaPredicted RBP24.53■■□□□ 1.52
TRIM54-201ENST00000296098 GLRA3O75311 464 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 HAUS5O94927 633 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 TOP3BO95985 862 aaKnown RBP24.52■■□□□ 1.52
TRIM54-201ENST00000296098 ERVK-10P10266 1014 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 DBN1Q16643 649 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 CTC1Q2NKJ3 1217 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 ZNF669Q96BR6 464 aaPredicted RBP24.52■■□□□ 1.52
TRIM54-201ENST00000296098 CELF6Q96J87 481 aaKnown RBP24.52■■□□□ 1.52
TRIM54-201ENST00000296098 ARHGEF38Q9NXL2 777 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 FRMPD3Q5JV73 1810 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 A8MUI8 341 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 F8W810 466 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 IRAK2O43187 625 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 HNRNPCL1O60812 293 aaKnown RBP24.52■■□□□ 1.52
TRIM54-201ENST00000296098 DNAJC6O75061 913 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 GP5P40197 560 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 COG7P83436 770 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 OCRLQ01968 901 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 ITGA7Q13683 1181 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 SMAD1Q15797 465 aaKnown RBP24.52■■□□□ 1.52
TRIM54-201ENST00000296098 SWT1Q5T5J6 900 aaKnown RBP24.52■■□□□ 1.52
TRIM54-201ENST00000296098 C4orf50Q6ZRC1 276 aa24.52■■□□□ 1.52
TRIM54-201ENST00000296098 SERBP1Q8NC51 408 aaKnown RBP eCLIP24.52■■□□□ 1.52
TRIM54-201ENST00000296098 UTP4Q969X6 686 aaKnown RBP24.52■■□□□ 1.52
TRIM54-201ENST00000296098 SLC7A6OSQ96CW6 309 aaPredicted RBP24.52■■□□□ 1.52
TRIM54-201ENST00000296098 FCRL3Q96P31 734 aaPredicted RBP24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms