RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 ATP6V0D2Q8N8Y2 350 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 BTN2A3PQ96KV6 586 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 MRGPRX3Q96LB0 322 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 OMDQ99983 421 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 CRACR2AQ9BSW2 395 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 SLC4A5Q9BY07 1137 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 ACP6Q9NPH0 428 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 KIAA1522Q9P206 1035 aaPredicted RBP13.2□□□□□ -0.3
CD44-203ENST00000278386 SERGEFQ9UGK8 458 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 CNTN6Q9UQ52 1028 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 BTBD3Q9Y2F9 522 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 PCDHGB2Q9Y5G2 931 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 FAM221BA6H8Z2 402 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 LRRC72A6NJI9 287 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 IGHV4-34P06331 123 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 SRPRAP08240 638 aaKnown RBP13.19□□□□□ -0.3
CD44-203ENST00000278386 STK19P49842 368 aaPredicted RBP13.19□□□□□ -0.3
CD44-203ENST00000278386 ECT2LQ008S8 904 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 SCAPQ12770 1279 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 INAVAQ3KP66 663 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 CCDC157Q569K6 752 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 RABGAP1LQ5R372 815 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 GJB7Q6PEY0 223 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 NCEH1Q6PIU2 408 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 TRIM65Q6PJ69 517 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 ENOSF1Q7L5Y1 443 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 SLCO6A1Q86UG4 719 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 PASD1Q8IV76 773 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 APCDD1Q8J025 514 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 BAHD1Q8TBE0 780 aaPredicted RBP13.19□□□□□ -0.3
CD44-203ENST00000278386 ZNF606Q8WXB4 792 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 RNF34Q969K3 372 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 IGSF8Q969P0 613 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 RPL10LQ96L21 214 aaKnown RBP13.19□□□□□ -0.3
CD44-203ENST00000278386 SLC6A18Q96N87 628 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 MED15Q96RN5 788 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 CDC6Q99741 560 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 ACE2Q9BYF1 805 aaPredicted RBP13.19□□□□□ -0.3
CD44-203ENST00000278386 OSGEPQ9NPF4 335 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 SLC12A6Q9UHW9 1150 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 CYTH4Q9UIA0 394 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 ZZEF1O43149 2961 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 ADAMTS20P59510 1910 aa13.19□□□□□ -0.3
CD44-203ENST00000278386 COL5A1P20908 1838 aaPredicted RBP13.18□□□□□ -0.3
CD44-203ENST00000278386 ITIH6Q6UXX5 1313 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 DOCK9Q9BZ29 2069 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 TARSL2A2RTX5 802 aaKnown RBP13.18□□□□□ -0.3
CD44-203ENST00000278386 H0Y8X5 98 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 KCNK3O14649 394 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 ADH1BP00325 375 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 ATXN1LP0C7T5 689 aaKnown RBP13.18□□□□□ -0.3
CD44-203ENST00000278386 C7P10643 843 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 PDGFRAP16234 1089 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 ABCB4P21439 1286 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 NNMTP40261 264 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 GRK6P43250 576 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 GALCP54803 685 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 YWHAZP63104 245 aaKnown RBP13.18□□□□□ -0.3
CD44-203ENST00000278386 PITX1P78337 314 aaPredicted RBP13.18□□□□□ -0.3
CD44-203ENST00000278386 CDK17Q00537 523 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 C9orf64Q5T6V5 341 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 LRSAM1Q6UWE0 723 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 GBP6Q6ZN66 633 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 BEND5Q7L4P6 421 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 PROSER1Q86XN7 944 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 STK40Q8N2I9 435 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 KDM1BQ8NB78 822 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 STK32AQ8WU08 396 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 FAM81BQ96LP2 452 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 NEUROG2Q9H2A3 272 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 THAP9Q9H5L6 903 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 AASDHPPTQ9NRN7 309 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 DDIT4Q9NX09 232 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 FZD4Q9ULV1 537 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 LHX6Q9UPM6 363 aa13.18□□□□□ -0.3
CD44-203ENST00000278386 GOLGA4Q13439 2230 aaKnown RBP13.17□□□□□ -0.3
CD44-203ENST00000278386 PKD1L2Q7Z442 2459 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 FREM2Q5SZK8 3169 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 A0A1B0GVM2 712 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 A0A1W2PPC4 97 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 TCAF2A6NFQ2 919 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 KCNU1A8MYU2 1149 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 GRAP2O75791 330 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 IL1BP01584 269 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 IGLV3-25P01717 112 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 SLC2A3P11169 496 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 SLC9A1P19634 815 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 SLC8A1P32418 973 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 CTSKP43235 329 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 RACK1P63244 317 aaKnown RBP13.17□□□□□ -0.3
CD44-203ENST00000278386 APBA1Q02410 837 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 TAF5Q15542 800 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 TTC39BQ5VTQ0 682 aaPredicted RBP13.17□□□□□ -0.3
CD44-203ENST00000278386 SND1Q7KZF4 910 aaKnown RBP eCLIP13.17□□□□□ -0.3
CD44-203ENST00000278386 TMEM110Q86TL2 294 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 DEFB106AQ8N104 65 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 CCAR2Q8N163 923 aaKnown RBP13.17□□□□□ -0.3
CD44-203ENST00000278386 C1orf131Q8NDD1 294 aaKnown RBP13.17□□□□□ -0.3
CD44-203ENST00000278386 OR2T34Q8NGX1 318 aa13.17□□□□□ -0.3
CD44-203ENST00000278386 OR14C36Q8NHC7 312 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms