RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TMEM59LQ9UK28 342 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 SLC30A1Q9Y6M5 507 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 M0QZQ0 153 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 GABRDO14764 452 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 GSTA1P08263 222 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 GSTA2P09210 222 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 PSMB4P28070 264 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 SCNN1BP51168 640 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 TMPRSS15P98073 1019 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 CA9Q16790 459 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 TAS2R42Q7RTR8 314 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 BLOC1S5Q8TDH9 187 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 CD101Q93033 1021 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 P2RY11Q96G91 374 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 NPY6RQ99463 290 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 GPR63Q9BZJ6 419 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 SCUBE2Q9NQ36 999 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 ARHGEF38Q9NXL2 777 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 YIPF1Q9Y548 306 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 SBF1O95248 1867 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 CLUHO75153 1309 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 SCAMP3O14828 347 aaKnown RBP11.87□□□□□ -0.51
VPS4A-201ENST00000254950 MFSD11O43934 449 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 NBNO60934 754 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 BAIAP3O94812 1187 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 CCNB1P14635 433 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 PPP3CCP48454 512 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 C1QTNF8P60827 252 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 SLC25A11Q02978 314 aaKnown RBP11.87□□□□□ -0.51
VPS4A-201ENST00000254950 LRRC14Q15048 493 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 C16orf59Q7L2K0 433 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 MFN1Q8IWA4 741 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 ZNF557Q8N988 423 aaPredicted RBP11.87□□□□□ -0.51
VPS4A-201ENST00000254950 KREMEN2Q8NCW0 462 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 TMBIM4Q9HC24 238 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 PIGVQ9NUD9 493 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 KIAA1217Q5T5P2 1943 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 ZNF197O14709 1029 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 SLC9A3R1O14745 358 aaPredicted RBP11.87□□□□□ -0.51
VPS4A-201ENST00000254950 PPFIA2O75334 1257 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 OAZ2O95190 189 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 TIMP1P01033 207 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 C8AP07357 584 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 TERF2Q15554 542 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 TRADDQ15628 312 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 XKR4Q5GH76 650 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 TTC39BQ5VTQ0 682 aaPredicted RBP11.87□□□□□ -0.51
VPS4A-201ENST00000254950 HJURPQ8NCD3 748 aaPredicted RBP11.87□□□□□ -0.51
VPS4A-201ENST00000254950 ZNF461Q8TAF7 563 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 SGSM3Q96HU1 749 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 TMEM209Q96SK2 561 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 ZCWPW1Q9H0M4 648 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 IGFLR1Q9H665 355 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 COMMD8Q9NX08 183 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 CLIC5Q9NZA1 410 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 SLC25A13Q9UJS0 675 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 SCML2Q9UQR0 700 aa11.87□□□□□ -0.51
VPS4A-201ENST00000254950 MAGEB16A2A368 324 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 BCLAF3A2AJT9 711 aaKnown RBP11.86□□□□□ -0.51
VPS4A-201ENST00000254950 FAM47DPA6NHR8 397 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 TRIM49D1C9J1S8 452 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 STX7O15400 261 aaKnown RBP11.86□□□□□ -0.51
VPS4A-201ENST00000254950 ENDOD1O94919 500 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 RHOQP17081 205 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 TAC1P20366 129 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 MDH1P40925 334 aaKnown RBP11.86□□□□□ -0.51
VPS4A-201ENST00000254950 NPY2RP49146 381 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 CCDC142Q17RM4 750 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 MFSD5Q6N075 450 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 ZNF449Q6P9G9 518 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.86□□□□□ -0.511e-8■■■■■ 30.7
VPS4A-201ENST00000254950 CMTR2Q8IYT2 770 aaKnown RBP11.86□□□□□ -0.51
VPS4A-201ENST00000254950 C2orf49Q9BVC5 232 aaPredicted RBP11.86□□□□□ -0.51
VPS4A-201ENST00000254950 CFHR5Q9BXR6 569 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 PITPNM3Q9BZ71 974 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 TLE6Q9H808 572 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 ASB3Q9Y575 518 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 COL11A1P12107 1806 aaPredicted RBP11.86□□□□□ -0.51
VPS4A-201ENST00000254950 KCNU1A8MYU2 1149 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 MAP2K7O14733 419 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 FGF19O95750 216 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 HAPLN1P10915 354 aaPredicted RBP11.86□□□□□ -0.51
VPS4A-201ENST00000254950 SSTR1P30872 391 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 GUCY1A3Q02108 690 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 TBC1D1Q86TI0 1168 aaPredicted RBP11.86□□□□□ -0.51
VPS4A-201ENST00000254950 UCMAQ8WVF2 138 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 AUTS2Q8WXX7 1259 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 PIWIL1Q96J94 861 aaKnown RBP11.86□□□□□ -0.51
VPS4A-201ENST00000254950 POLR1EQ9GZS1 481 aaKnown RBP11.86□□□□□ -0.51
VPS4A-201ENST00000254950 GRIN2DO15399 1336 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 GMNCA6NCL1 334 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 E9PAM4 449 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 TMEM189-UBE2V1I3L0A0 370 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 SASH3O75995 380 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 NFKB1P19838 968 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 PTPN7P35236 360 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 USP10Q14694 798 aaKnown RBP11.86□□□□□ -0.51
VPS4A-201ENST00000254950 MAB21L3Q8N8X9 362 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 NETO2Q8NC67 525 aa11.86□□□□□ -0.51
VPS4A-201ENST00000254950 C3orf58Q8NDZ4 430 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms