RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TLL1O43897 1013 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 GPC4O75487 556 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 SERPINH1P50454 418 aaKnown RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 RPS26P62854 115 aaKnown RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 RPA4Q13156 261 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF235Q14590 738 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 TAB1Q15750 504 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 ZCCHC12Q6PEW1 402 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 SARM1Q6SZW1 724 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 METTL16Q86W50 562 aaKnown RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 SNX19Q92543 992 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 KRT12Q99456 494 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 ZMYM5Q9UJ78 669 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 DEAF1O75398 565 aaPredicted RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 USP1O94782 785 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 RALBP11234 206 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 TECP42680 631 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 ATP8B2P98198 1209 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 RGS21Q2M5E4 152 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 ZDHHC20Q5W0Z9 365 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 KBTBD6Q86V97 674 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 PLD5Q8N7P1 536 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 C11orf65Q8NCR3 313 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 SGF29Q96ES7 293 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 TUBGCP5Q96RT8 1024 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 C17orf80Q9BSJ5 609 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 NLNQ9BYT8 704 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 DDX43Q9NXZ2 648 aaKnown RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 HESX1Q9UBX0 185 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 RUVBL2Q9Y230 463 aaKnown RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 CCDC154A6NI56 674 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 H3BM21 787 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 SMLR1H3BR10 107 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 CIDEAO60543 219 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 PLEKHA8P1O95397 391 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 CYC1P08574 325 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 TFEBP19484 476 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 PAICSP22234 425 aaKnown RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 GPD2P43304 727 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 IFI35P80217 286 aaPredicted RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 BNC1Q01954 994 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 TGM3Q08188 693 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 SLC38A6Q8IZM9 456 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 AIFM3Q96NN9 605 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 MMS19Q96T76 1030 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 EGFL8Q99944 293 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 HTATIP2Q9BUP3 242 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 MOV10Q9HCE1 1003 aaKnown RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 SARDHQ9UL12 918 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 ALG5Q9Y673 324 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 DICER1Q9UPY3 1922 aaKnown RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 PJA2O43164 708 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 ZBTB24O43167 697 aaPredicted RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 PRODHO43272 600 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 LRG1P02750 347 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 CASP4P49662 377 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 OVGP1Q12889 678 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 FRG1Q14331 258 aaKnown RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 CALCRLQ16602 461 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 EDRF1Q3B7T1 1238 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 KIAA1755Q5JYT7 1200 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 DENND5AQ6IQ26 1287 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF606Q8WXB4 792 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 REPS1Q96D71 796 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 CMTM5Q96DZ9 223 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 CEP170P1Q96L14 293 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 GAL3ST4Q96RP7 486 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 VAT1Q99536 393 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 CNPPD1Q9BV87 410 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 HINT2Q9BX68 163 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 KAT14Q9H8E8 782 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 IARS2Q9NSE4 1012 aaKnown RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 TDP1Q9NUW8 608 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 TLR7Q9NYK1 1049 aaKnown RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 DNAJC16Q9Y2G8 782 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 NOTCH3Q9UM47 2321 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 B2RBV5 119 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 CENPBD1B2RD01 187 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 SASH3O75995 380 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 TGM6O95932 706 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 TPBGLP0DKB5 382 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 RALAP11233 206 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 GRK6P43250 576 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 MAGEA6P43360 314 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 IREB2P48200 963 aaKnown RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 RAD23AP54725 363 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 KCNJ10P78508 379 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 PDCLQ13371 301 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 KIFC1Q9BW19 673 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 SMARCAL1Q9NZC9 954 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 SMG5Q9UPR3 1016 aaKnown RBP3.65□□□□□ -1.83
SCN1A-221ENST00000641996 EDDM13A0A1B0GTR0 161 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 RNGTTO60942 597 aaKnown RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 AHSA1O95433 338 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 PDCP20941 246 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 STAT5BP51692 787 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 COPZ1P61923 177 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 RELQ04864 619 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-221ENST00000641996 GRIK5Q16478 980 aa3.64□□□□□ -1.83
SCN1A-221ENST00000641996 C1orf122Q6ZSJ8 110 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms