RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 RAP1GAP2Q684P5 730 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 SARM1Q6SZW1 724 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 SERPINA13PQ6UXR4 307 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 SLC36A4Q6YBV0 504 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 TMEFF1Q8IYR6 380 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 LGI2Q8N0V4 545 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 CFAP52Q8N1V2 620 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 SLC20A1Q8WUM9 679 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 ERLEC1Q96DZ1 483 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 PGAP3Q96FM1 320 aaPredicted RBP19.91■□□□□ 0.78
CLN3-260ENST00000637578 SMOC1Q9H4F8 434 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 NLRC4Q9NPP4 1024 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 RXFP3Q9NSD7 469 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 INTS6Q9UL03 887 aaKnown RBP19.91■□□□□ 0.78
CLN3-260ENST00000637578 THADAQ6YHU6 1953 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 SYNCRIPO60506 623 aaKnown RBP19.9■□□□□ 0.78
CLN3-260ENST00000637578 LUC7L3O95232 432 aaKnown RBP19.9■□□□□ 0.78
CLN3-260ENST00000637578 ATP5BP06576 529 aaKnown RBP19.9■□□□□ 0.78
CLN3-260ENST00000637578 TPM3P06753 285 aa19.9■□□□□ 0.78
CLN3-260ENST00000637578 ABCB4P21439 1286 aa19.9■□□□□ 0.78
CLN3-260ENST00000637578 PTGER3P43115 390 aa19.9■□□□□ 0.78
CLN3-260ENST00000637578 DHPSP49366 369 aaPredicted RBP19.9■□□□□ 0.78
CLN3-260ENST00000637578 ARID5AQ03989 594 aa19.9■□□□□ 0.78
CLN3-260ENST00000637578 ARCQ7LC44 396 aa19.9■□□□□ 0.78
CLN3-260ENST00000637578 CYB5D2Q8WUJ1 264 aa19.9■□□□□ 0.78
CLN3-260ENST00000637578 PRDM16Q9HAZ2 1276 aa19.9■□□□□ 0.78
CLN3-260ENST00000637578 ITM2CQ9NQX7 267 aa19.9■□□□□ 0.78
CLN3-260ENST00000637578 TMEM51Q9NW97 253 aa19.9■□□□□ 0.78
CLN3-260ENST00000637578 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.9■□□□□ 0.78
CLN3-260ENST00000637578 USP36Q9P275 1121 aaKnown RBP19.9■□□□□ 0.78
CLN3-260ENST00000637578 CKAP5Q14008 2032 aa19.89■□□□□ 0.78
CLN3-260ENST00000637578 M0QYT0 321 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 EPHX1P07099 455 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 POLR2EP19388 210 aaKnown RBP19.89■□□□□ 0.77
CLN3-260ENST00000637578 STAT1P42224 750 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 FMO1Q01740 532 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 PEAR1Q5VY43 1037 aaPredicted RBP19.89■□□□□ 0.77
CLN3-260ENST00000637578 DGLUCYQ7Z3D6 616 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 CYP2U1Q7Z449 544 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 CHSY1Q86X52 802 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 TMPRSS6Q8IU80 811 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 CARNMT1Q8N4J0 409 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 C12orf50Q8NA57 414 aaPredicted RBP19.89■□□□□ 0.77
CLN3-260ENST00000637578 CPA5Q8WXQ8 436 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 MYO19Q96H55 970 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 SPAG5Q96R06 1193 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 CD93Q9NPY3 652 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 TMEM59LQ9UK28 342 aa19.89■□□□□ 0.77
CLN3-260ENST00000637578 MUC22E2RYF6 1773 aaPredicted RBP19.89■□□□□ 0.77
CLN3-260ENST00000637578 F5H5T6 163 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 IGLV3-19P01714 112 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 TFE3P19532 575 aaPredicted RBP19.88■□□□□ 0.77
CLN3-260ENST00000637578 CXCR3P49682 368 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 NME3Q13232 169 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 CDH18Q13634 790 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 AASDHQ4L235 1098 aaPredicted RBP19.88■□□□□ 0.77
CLN3-260ENST00000637578 NAA35Q5VZE5 725 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 TCEAL6Q6IPX3 200 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 BNIPLQ7Z465 357 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 SYT12Q8IV01 421 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 KDM1BQ8NB78 822 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 TCEAL3Q969E4 200 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 PIGVQ9NUD9 493 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 ARHGEF38Q9NXL2 777 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 CYP8B1Q9UNU6 501 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 NUP205Q92621 2012 aa19.88■□□□□ 0.77
CLN3-260ENST00000637578 SYNJ2BP-COX16A0A087WUM0 186 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 ASLP04424 464 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 HLA-EP13747 358 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 MMP8P22894 467 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 DPP6P42658 865 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 RNASE9P60153 205 aaKnown RBP19.87■□□□□ 0.77
CLN3-260ENST00000637578 RPL6Q02878 288 aaKnown RBP19.87■□□□□ 0.77
CLN3-260ENST00000637578 ARID5BQ14865 1188 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 SLC25A52Q3SY17 297 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 C5orf22Q49AR2 442 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 FNDC3BQ53EP0 1204 aaKnown RBP19.87■□□□□ 0.77
CLN3-260ENST00000637578 C2CD6Q53TS8 623 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 TTC39BQ5VTQ0 682 aaPredicted RBP19.87■□□□□ 0.77
CLN3-260ENST00000637578 FBXL22Q6P050 247 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 MSANTD4Q8NCY6 345 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 OR2T3Q8NH03 318 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 RNF34Q969K3 372 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 ZNF419Q96HQ0 510 aaPredicted RBP19.87■□□□□ 0.77
CLN3-260ENST00000637578 TRIM5Q9C035 493 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 TTYH3Q9C0H2 523 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 TMEM74BQ9NUR3 256 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 COX16Q9P0S2 106 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 KIAA1522Q9P206 1035 aaPredicted RBP19.87■□□□□ 0.77
CLN3-260ENST00000637578 EVLQ9UI08 416 aaPredicted RBP19.87■□□□□ 0.77
CLN3-260ENST00000637578 PILRBQ9UKJ0 227 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 STAP1Q9ULZ2 295 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 F9P00740 461 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 HOXD12P35452 270 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 CSKP41240 450 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 AUHQ13825 339 aaKnown RBP19.87■□□□□ 0.77
CLN3-260ENST00000637578 PITRM1Q5JRX3 1037 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 BRMS1LQ5PSV4 323 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 FAM102AQ5T9C2 384 aaPredicted RBP19.87■□□□□ 0.77
CLN3-260ENST00000637578 LYSMD4Q5XG99 296 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms