RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 MESP2Q0VG99 397 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 CDH18Q13634 790 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 AUHQ13825 339 aaKnown RBP18.88■□□□□ 0.61
CLN3-259ENST00000637551 CRY1Q16526 586 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 SLC18A3Q16572 532 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 SDE2Q6IQ49 451 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 RFWD3Q6PCD5 774 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 LONP2Q86WA8 852 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 MFN1Q8IWA4 741 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 CPLX3Q8WVH0 158 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 P2RY11Q96G91 374 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 ADAM33Q9BZ11 813 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 RBSNQ9H1K0 784 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 OSBPL2Q9H1P3 480 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 FBRSQ9HAH7 460 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 ELOVL2Q9NXB9 296 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 TAS2R14Q9NYV8 317 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 PLK2Q9NYY3 685 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 CALCOCO1Q9P1Z2 691 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 THAP10Q9P2Z0 257 aaPredicted RBP18.88■□□□□ 0.61
CLN3-259ENST00000637551 PPARGC1AQ9UBK2 798 aaKnown RBP18.88■□□□□ 0.61
CLN3-259ENST00000637551 GGA2Q9UJY4 613 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 NENFQ9UMX5 172 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 HS3ST4Q9Y661 456 aa18.88■□□□□ 0.61
CLN3-259ENST00000637551 MUC22E2RYF6 1773 aaPredicted RBP18.88■□□□□ 0.61
CLN3-259ENST00000637551 PRRT4C9JH25 899 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 ALDH1A2O94788 518 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 FRYLO94915 3013 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 MOCS3O95396 460 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 ATP5BP06576 529 aaKnown RBP18.87■□□□□ 0.61
CLN3-259ENST00000637551 SKILP12757 684 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 ZNF135P52742 658 aaPredicted RBP18.87■□□□□ 0.61
CLN3-259ENST00000637551 PLK1P53350 603 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 CDH4P55283 916 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 CSTF1Q05048 431 aaKnown RBP18.87■□□□□ 0.61
CLN3-259ENST00000637551 RAP1GAP2Q684P5 730 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 FBXL22Q6P050 247 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 ALKBH5Q6P6C2 394 aaKnown RBP18.87■□□□□ 0.61
CLN3-259ENST00000637551 LRRC31Q6UY01 552 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 C11orf74Q86VG3 221 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 WDR5BQ86VZ2 330 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 RASSF3Q86WH2 238 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 PSTKQ8IV42 348 aaKnown RBP18.87■□□□□ 0.61
CLN3-259ENST00000637551 LGI2Q8N0V4 545 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 EMC1Q8N766 993 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 JOSD2Q8TAC2 188 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 CHD5Q8TDI0 1954 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 LMLNQ96KR4 655 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 MCEEQ96PE7 176 aa18.87■□□□□ 0.61
CLN3-259ENST00000637551 POLMQ9NP87 494 aaPredicted RBP18.87■□□□□ 0.61
CLN3-259ENST00000637551 KIAA1522Q9P206 1035 aaPredicted RBP18.87■□□□□ 0.61
CLN3-259ENST00000637551 TMEM191CA6NGB0 347 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 DRGXA6NNA5 263 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 AKR1B15C9JRZ8 316 aaPredicted RBP18.86■□□□□ 0.61
CLN3-259ENST00000637551 ADCY5O95622 1261 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 TFE3P19532 575 aaPredicted RBP18.86■□□□□ 0.61
CLN3-259ENST00000637551 ADRA1BP35368 520 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 HDAC4P56524 1084 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 RPS24P62847 133 aaKnown RBP18.86■□□□□ 0.61
CLN3-259ENST00000637551 SULT2A1Q06520 285 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 ASTE1Q2TB18 679 aaPredicted RBP18.86■□□□□ 0.61
CLN3-259ENST00000637551 ZNF783Q6ZMS7 281 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 SETD3Q86TU7 594 aaPredicted RBP18.86■□□□□ 0.61
CLN3-259ENST00000637551 ZNF683Q8IZ20 524 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 FAM172AQ8WUF8 416 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 ATRIPQ8WXE1 791 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 BHMTQ93088 406 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 TTC17Q96AE7 1141 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 ZNF653Q96CK0 615 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 RPRD1AQ96P16 312 aaPredicted RBP18.86■□□□□ 0.61
CLN3-259ENST00000637551 DONSONQ9NYP3 566 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 CNOT8Q9UFF9 292 aaKnown RBP18.86■□□□□ 0.61
CLN3-259ENST00000637551 XPO7Q9UIA9 1087 aaKnown RBP18.86■□□□□ 0.61
CLN3-259ENST00000637551 TBC1D30Q9Y2I9 924 aa18.86■□□□□ 0.61
CLN3-259ENST00000637551 CEP250Q9BV73 2442 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 OTOGLQ3ZCN5 2332 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 SYNJ2BP-COX16A0A087WUM0 186 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 A0A087X0T9 212 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 GOLGA6L7A0A1B0GV03 622 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 TSPAN3O60637 253 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 KLF8O95600 359 aaPredicted RBP18.85■□□□□ 0.61
CLN3-259ENST00000637551 DLDP09622 509 aaKnown RBP18.85■□□□□ 0.61
CLN3-259ENST00000637551 FAM228BP0C875 321 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 SGSHP51688 502 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 ZNF75DP51815 510 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 RPL7AP62424 266 aaKnown RBP18.85■□□□□ 0.61
CLN3-259ENST00000637551 ATP11AP98196 1134 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 GEN1Q17RS7 908 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 C2orf27AQ580R0 203 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 PKN3Q6P5Z2 889 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 TMC6Q7Z403 805 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 ADIPOR2Q86V24 386 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 CCAR2Q8N163 923 aaKnown RBP18.85■□□□□ 0.61
CLN3-259ENST00000637551 ALLCQ8N6M5 410 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 TSTD1Q8NFU3 115 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.85■□□□□ 0.61
CLN3-259ENST00000637551 ABCB8Q9NUT2 735 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 COX16Q9P0S2 106 aa18.85■□□□□ 0.61
CLN3-259ENST00000637551 ADAM23O75077 832 aa18.84■□□□□ 0.61
CLN3-259ENST00000637551 CYP1A2P05177 515 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms