RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 C17orf53Q8N3J3 647 aaPredicted RBP3.14□□□□□ -1.91
VIM-210ENST00000637053 AOPEPQ8N6M6 819 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 RTL3Q8N8U3 475 aaKnown RBP3.14□□□□□ -1.91
VIM-210ENST00000637053 ZNF565Q8N9K5 539 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 TMEM145Q8NBT3 493 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 FBXO18Q8NFZ0 1043 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 GPR150Q8NGU9 434 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 ZNF671Q8TAW3 534 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 SLC26A7Q8TE54 656 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 DDI1Q8WTU0 396 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 CACTINQ8WUQ7 758 aaKnown RBP3.14□□□□□ -1.91
VIM-210ENST00000637053 DDX17Q92841 729 aaKnown RBP3.14□□□□□ -1.91
VIM-210ENST00000637053 CUL5Q93034 780 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 SMARCE1Q969G3 411 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 COA7Q96BR5 231 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 KTI12Q96EK9 354 aaPredicted RBP3.14□□□□□ -1.91
VIM-210ENST00000637053 DTNBP1Q96EV8 351 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 PGAP3Q96FM1 320 aaPredicted RBP3.14□□□□□ -1.91
VIM-210ENST00000637053 SIPA1Q96FS4 1042 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 MSANTD3Q96H12 275 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 IFT74Q96LB3 600 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 NLRP4Q96MN2 994 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 FAM111AQ96PZ2 611 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 PKP4Q99569 1192 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 CGRRF1Q99675 332 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 PRRX2Q99811 253 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 SYT3Q9BQG1 590 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 PUS3Q9BZE2 481 aaKnown RBP3.14□□□□□ -1.91
VIM-210ENST00000637053 KCNH6Q9H252 994 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 VPS16Q9H269 839 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 BICC1Q9H694 974 aaKnown RBP3.14□□□□□ -1.91
VIM-210ENST00000637053 MRPL44Q9H9J2 332 aaKnown RBP3.14□□□□□ -1.91
VIM-210ENST00000637053 WDR6Q9NNW5 1121 aaKnown RBP3.14□□□□□ -1.91
VIM-210ENST00000637053 FAM114A2Q9NRY5 505 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 SIRT3Q9NTG7 399 aaPredicted RBP3.14□□□□□ -1.91
VIM-210ENST00000637053 GJB4Q9NTQ9 266 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 INTS13Q9NVM9 706 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 TAB2Q9NYJ8 693 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 SELENONQ9NZV5 590 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 B4GALT6Q9UBX8 382 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 TUBD1Q9UJT1 453 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 DLGAP4Q9Y2H0 992 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 SNX9Q9Y5X1 595 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 BACE2Q9Y5Z0 518 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 PSAT1Q9Y617 370 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 POMT1Q9Y6A1 747 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 CYP46A1Q9Y6A2 500 aa3.14□□□□□ -1.91
VIM-210ENST00000637053 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.14□□□□□ -1.911e-9■□□□□ 10.4
VIM-210ENST00000637053 CARMIL1Q5VZK9 1371 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 AATKQ6ZMQ8 1374 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 HSBP1L1C9JCN9 74 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 E7EVH7 732 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 E9PBE3 544 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 MEIS1O00470 390 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 PSMD14O00487 310 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 PPEF2O14830 753 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 ZNF263O14978 683 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 TO15178 435 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 HDAC3O15379 428 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 CD3EAPO15446 510 aaKnown RBP3.13□□□□□ -1.91
VIM-210ENST00000637053 TBX1O43435 398 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 TGM5O43548 720 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 GPRIN2O60269 458 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 CACNG3O60359 315 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 DLX3O60479 287 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 CYTIPO60759 359 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 DTNBO60941 627 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 NDUFS2O75306 463 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 SPAG6O75602 509 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 ZNF189O75820 626 aaPredicted RBP3.13□□□□□ -1.91
VIM-210ENST00000637053 KLHL18O94889 574 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 KLHL2O95198 593 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 OR5F1O95221 314 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 HTR3BO95264 441 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 TNFRSF6BO95407 300 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 PRAMEF12O95522 483 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 METTL18O95568 372 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 ECDO95905 644 aaPredicted RBP3.13□□□□□ -1.91
VIM-210ENST00000637053 ENO2P09104 434 aaPredicted RBP3.13□□□□□ -1.91
VIM-210ENST00000637053 PRKAR1AP10644 381 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 GHRP10912 638 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 CDK4P11802 303 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 MYL4P12829 197 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 KRT5P13647 590 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 NME1P15531 152 aaKnown RBP3.13□□□□□ -1.91
VIM-210ENST00000637053 CASTP20810 708 aaKnown RBP3.13□□□□□ -1.91
VIM-210ENST00000637053 AGXTP21549 392 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 NFKBIAP25963 317 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 ANXA13P27216 316 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 ABCD3P28288 659 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 TM4SF1P30408 202 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 PRKAR2BP31323 418 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 BMP8BP34820 402 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 GRK5P34947 590 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 IL13P35225 146 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 BMI1P35226 326 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 PLCD1P51178 756 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 MNAT1P51948 309 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 HUNKP57058 714 aa3.13□□□□□ -1.91
VIM-210ENST00000637053 RAC3P60763 192 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms