RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 TMEM110Q86TL2 294 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 SCUBE3Q8IX30 993 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 ATP6V0D2Q8N8Y2 350 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 C1orf216Q8TAB5 229 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 ADAMTS14Q8WXS8 1223 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 SNX19Q92543 992 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 KAT5Q92993 513 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 SLC39A13Q96H72 371 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 FCRL2Q96LA5 508 aaPredicted RBP12.35□□□□□ -0.43
UPF3B-204ENST00000619445 ZSWIM1Q9BR11 485 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 RSPH9Q9H1X1 276 aaPredicted RBP12.35□□□□□ -0.43
UPF3B-204ENST00000619445 GAREM1Q9H706 876 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 UBE2TQ9NPD8 197 aaPredicted RBP12.35□□□□□ -0.43
UPF3B-204ENST00000619445 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.35□□□□□ -0.43
UPF3B-204ENST00000619445 ZMIZ1Q9ULJ6 1067 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 AKAP13Q12802 2813 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 GTPBP10A4D1E9 387 aaKnown RBP12.34□□□□□ -0.43
UPF3B-204ENST00000619445 LRRC72A6NJI9 287 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 HYAL3O43820 417 aaPredicted RBP12.34□□□□□ -0.43
UPF3B-204ENST00000619445 GABBR2O75899 941 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 LETM1O95202 739 aaPredicted RBP12.34□□□□□ -0.43
UPF3B-204ENST00000619445 LUC7L3O95232 432 aaKnown RBP12.34□□□□□ -0.43
UPF3B-204ENST00000619445 BMP6P22004 513 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 GNA15P30679 374 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 SLC6A4P31645 630 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 CD70P32970 193 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 GBP6Q6ZN66 633 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 FAM124AQ86V42 546 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 ARHGEF19Q8IW93 802 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 CARNMT1Q8N4J0 409 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 ZNF606Q8WXB4 792 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 KREMEN1Q96MU8 473 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 TMEM121BQ9BXQ6 578 aaPredicted RBP12.34□□□□□ -0.43
UPF3B-204ENST00000619445 TM7SF3Q9NS93 570 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 ASNSD1Q9NWL6 643 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 STIM2Q9P246 746 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 RWDD2AQ9UIY3 292 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 FZD4Q9ULV1 537 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 CEP83Q9Y592 693 aa12.34□□□□□ -0.43
UPF3B-204ENST00000619445 EDDM13A0A1B0GTR0 161 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 F5H5T6 163 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 PIK3R2O00459 728 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 BIN1O00499 593 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 THAP12O43422 761 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 ADH1BP00325 375 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 FYNP06241 537 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 ABCB4P21439 1286 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 ACSL1P33121 698 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 CSKP41240 450 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 CDK17Q00537 523 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 ECT2LQ008S8 904 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 HLA-BQ31612 363 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 EFHC1Q5JVL4 640 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 RABGAP1LQ5R372 815 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 CHSY1Q86X52 802 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 CACUL1Q86Y37 369 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 OR2I1PQ8NGU4 316 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 GANCQ8TET4 914 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 SETD7Q8WTS6 366 aaKnown RBP12.33□□□□□ -0.44
UPF3B-204ENST00000619445 CLEC4CQ8WTT0 213 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 ZCCHC14Q8WYQ9 949 aaKnown RBP12.33□□□□□ -0.44
UPF3B-204ENST00000619445 IGSF8Q969P0 613 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 LMLNQ96KR4 655 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 PABPC3Q9H361 631 aaKnown RBP12.33□□□□□ -0.44
UPF3B-204ENST00000619445 C6orf106Q9H6K1 298 aaPredicted RBP12.33□□□□□ -0.44
UPF3B-204ENST00000619445 KIAA1468Q9P260 1216 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 APEX2Q9UBZ4 518 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 PCOLCE2Q9UKZ9 415 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 NAALADL1Q9UQQ1 740 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 ITIH6Q6UXX5 1313 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 ZFYVE26Q68DK2 2539 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 KNTC1P50748 2209 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 CFAP47Q6ZTR5 3102 aa12.33□□□□□ -0.44
UPF3B-204ENST00000619445 GOLGA6L7A0A1B0GV03 622 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 E5RJQ4 531 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 PAPSS1O43252 624 aaPredicted RBP12.32□□□□□ -0.44
UPF3B-204ENST00000619445 HSF2BPO75031 334 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 CBFA2T3O75081 653 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 TRUB2O95900 331 aaKnown RBP12.32□□□□□ -0.44
UPF3B-204ENST00000619445 MOCS2O96007 188 aaPredicted RBP12.32□□□□□ -0.44
UPF3B-204ENST00000619445 FTH1P19P0C7X4 201 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 SPINK2P20155 84 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 CCR1P32246 355 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 GRK6P43250 576 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 VASPP50552 380 aaPredicted RBP12.32□□□□□ -0.44
UPF3B-204ENST00000619445 CCT8P50990 548 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 SGSHP51688 502 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 STX17P56962 302 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 RPS24P62847 133 aaKnown RBP12.32□□□□□ -0.44
UPF3B-204ENST00000619445 RACK1P63244 317 aaKnown RBP12.32□□□□□ -0.44
UPF3B-204ENST00000619445 PTK2Q05397 1052 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 PDCLQ13371 301 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 CST6Q15828 149 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 EXOC3L4Q17RC7 722 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 DCAF6Q58WW2 860 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 PITRM1Q5JRX3 1037 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 ACBD5Q5T8D3 534 aaPredicted RBP12.32□□□□□ -0.44
UPF3B-204ENST00000619445 NADSYN1Q6IA69 706 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 TRIM65Q6PJ69 517 aa12.32□□□□□ -0.44
UPF3B-204ENST00000619445 DBX2Q6ZNG2 339 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms