RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 TAL1P17542 331 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 CLDN10P78369 228 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 DMP1Q13316 513 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 TAF1CQ15572 869 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 ZACNQ401N2 412 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 CCDC153Q494R4 210 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 MROH9Q5TGP6 573 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 ITPRIPL1Q6GPH6 555 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 C16orf87Q6PH81 154 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 CLVS1Q8IUQ0 354 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 REM2Q8IYK8 340 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 LILRA2Q8N149 483 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 EFCAB3Q8N7B9 438 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 TMEM35BQ8NCS4 154 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 TMEM161BQ8NDZ6 487 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 BHLHE22Q8NFJ8 381 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 RP9Q8TA86 221 aaKnown RBP11.09□□□□□ -0.63
UPF3A-212ENST00000619079 CNDP1Q96KN2 507 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 SNX27Q96L92 541 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 CYP26B1Q9NR63 512 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 SLC38A7Q9NVC3 462 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 RNF11Q9Y3C5 154 aa11.09□□□□□ -0.63
UPF3A-212ENST00000619079 RGSL1A5PLK6 1076 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 GPR25O00155 361 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 ZNF195O14628 629 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 CFBP00751 764 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 CSH1P0DML2 217 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 CSH2P0DML3 217 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 MCF2P10911 925 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 PROZP22891 400 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 S100A1P23297 94 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 ME2P23368 584 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 KDELR1P24390 212 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 QARSP47897 775 aaKnown RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 THOP1P52888 689 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 ABCE1P61221 599 aaKnown RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 RPL10AP62906 217 aaKnown RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 OGDHQ02218 1023 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 CNTN2Q02246 1040 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 SLC25A11Q02978 314 aaKnown RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 PPP2R5DQ14738 602 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 DARS2Q6PI48 645 aaKnown RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 RFX6Q8HWS3 928 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 PGAM4Q8N0Y7 254 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 TMEM102Q8N9M5 508 aaPredicted RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 TNIP2Q8NFZ5 429 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 SPATA18Q8TC71 538 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 HSPH1Q92598 858 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 ELMO3Q96BJ8 720 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 PPP1R10Q96QC0 940 aaKnown RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 SORT1Q99523 831 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 FERMT1Q9BQL6 677 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 MRPL40Q9NQ50 206 aaKnown RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 GID8Q9NWU2 228 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 TESPA1A2RU30 521 aaPredicted RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 TRIM64CA6NLI5 447 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 AIM2O14862 343 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 PLIN3O60664 434 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 ADAM23O75077 832 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 GSRP00390 522 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 ARP10275 920 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 CYP2C8P10632 490 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 ADSLP30566 484 aaPredicted RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 TM4SF4P48230 202 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 NUMBP49757 651 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 INSCQ1MX18 579 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 N4BP2L1Q5TBK1 243 aaPredicted RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 GPAT2Q6NUI2 795 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 DCLRE1AQ6PJP8 1040 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 EPGNQ6UW88 154 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 DSELQ8IZU8 1212 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 CENPSQ8N2Z9 138 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 DEPDC1BQ8WUY9 529 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 C12orf43Q96C57 262 aaKnown RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 CDRT15Q96T59 188 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 PARK7Q99497 189 aaKnown RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 CGREF1Q99674 301 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 NEURL2Q9BR09 285 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 ANKRD60Q9BZ19 345 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 RSAD1Q9HA92 442 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 TRPC7Q9HCX4 862 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 TRPV5Q9NQA5 729 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 PNPOQ9NVS9 261 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 KIAA1522Q9P206 1035 aaPredicted RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 TSC22D4Q9Y3Q8 395 aa11.08□□□□□ -0.64
UPF3A-212ENST00000619079 CTDP1Q9Y5B0 961 aaPredicted RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 HEMK1Q9Y5R4 338 aaPredicted RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 MYH9P35579 1960 aaKnown RBP11.08□□□□□ -0.64
UPF3A-212ENST00000619079 PSMD12O00232 456 aaPredicted RBP11.07□□□□□ -0.64
UPF3A-212ENST00000619079 AVILO75366 819 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 ZMPSTE24O75844 475 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 ALDH1A1P00352 501 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 XRCC1P18887 633 aaPredicted RBP11.07□□□□□ -0.64
UPF3A-212ENST00000619079 MX2P20592 715 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 PSMA2P25787 234 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 YWHABP31946 246 aaKnown RBP11.07□□□□□ -0.64
UPF3A-212ENST00000619079 MAGEA6P43360 314 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 NDST2P52849 883 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 KCNC4Q03721 635 aa11.07□□□□□ -0.64
UPF3A-212ENST00000619079 ZBTB17Q13105 803 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms