RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 GRAMD4Q6IC98 578 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 SCYL2Q6P3W7 929 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 RAD9BQ6WBX8 426 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 ADIPOR2Q86V24 386 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 CNGA4Q8IV77 575 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 APCDD1Q8J025 514 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 ATP6V0D2Q8N8Y2 350 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 TXNDC5Q8NBS9 432 aaKnown RBP13.94□□□□□ -0.18
LINC00540-202ENST00000616974 USP33Q8TEY7 942 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 IQCDQ96DY2 449 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 VCPIP1Q96JH7 1222 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 HHIPQ96QV1 700 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 TRIM62Q9BVG3 475 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 NUP85Q9BW27 656 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 OSBPL6Q9BZF3 934 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 SLC6A17Q9H1V8 727 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 CD93Q9NPY3 652 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 PARVAQ9NVD7 372 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 PCSK1NQ9UHG2 260 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 CEP192Q8TEP8 1941 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 RCCD1A6NED2 376 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 K7ESF4 209 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 GALR2O43603 387 aaPredicted RBP13.93□□□□□ -0.18
LINC00540-202ENST00000616974 AKR1B10O60218 316 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 DRD1P21728 446 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 PSMA2P25787 234 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 MZF1P28698 734 aaPredicted RBP13.93□□□□□ -0.18
LINC00540-202ENST00000616974 GBP1P32455 592 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 GRIA2P42262 883 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 SRSF5Q13243 272 aaKnown RBP13.93□□□□□ -0.18
LINC00540-202ENST00000616974 HEATR6Q6AI08 1181 aaKnown RBP13.93□□□□□ -0.18
LINC00540-202ENST00000616974 CXorf57Q6NSI4 855 aaKnown RBP13.93□□□□□ -0.18
LINC00540-202ENST00000616974 KIAA1211LQ6NV74 962 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 CCAR2Q8N163 923 aaKnown RBP13.93□□□□□ -0.18
LINC00540-202ENST00000616974 AZIN2Q96A70 460 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 RPRD1AQ96P16 312 aaPredicted RBP13.93□□□□□ -0.18
LINC00540-202ENST00000616974 GOLPH3Q9H4A6 298 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 DEF6Q9H4E7 631 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 REXO2Q9Y3B8 237 aaKnown RBP13.93□□□□□ -0.18
LINC00540-202ENST00000616974 THADAQ6YHU6 1953 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 A0A0A0MRY4 1105 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 LRCH4O75427 683 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 KLF8O95600 359 aaPredicted RBP13.93□□□□□ -0.18
LINC00540-202ENST00000616974 LATS1O95835 1130 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 APODP05090 189 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 TDGF1P13385 188 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 HLA-EP13747 358 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 ADRA1BP35368 520 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 SMTNL2Q2TAL5 461 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 KCNT1Q5JUK3 1230 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 MFN1Q8IWA4 741 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 DRC7Q8IY82 874 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 NELL2Q99435 816 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 ZNF212Q9UDV6 495 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 ACTL7AQ9Y615 435 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 R4GN57 208 aa13.93□□□□□ -0.18
LINC00540-202ENST00000616974 RALGAPA1Q6GYQ0 2036 aa13.92□□□□□ -0.18
LINC00540-202ENST00000616974 SSU72P8A0A1W2PR75 194 aa13.92□□□□□ -0.18
LINC00540-202ENST00000616974 E9PAM4 449 aa13.92□□□□□ -0.18
LINC00540-202ENST00000616974 F5H5T6 163 aa13.92□□□□□ -0.18
LINC00540-202ENST00000616974 CYP1A2P05177 515 aa13.92□□□□□ -0.18
LINC00540-202ENST00000616974 EIF2DP41214 584 aaKnown RBP13.92□□□□□ -0.18
LINC00540-202ENST00000616974 CSTF1Q05048 431 aaKnown RBP13.92□□□□□ -0.18
LINC00540-202ENST00000616974 CACUL1Q86Y37 369 aa13.92□□□□□ -0.18
LINC00540-202ENST00000616974 FRMD1Q8N878 549 aa13.92□□□□□ -0.18
LINC00540-202ENST00000616974 ZNF513Q8N8E2 541 aaPredicted RBP13.92□□□□□ -0.18
LINC00540-202ENST00000616974 MSANTD3Q96H12 275 aa13.92□□□□□ -0.18
LINC00540-202ENST00000616974 CCDC42Q96M95 316 aa13.92□□□□□ -0.18
LINC00540-202ENST00000616974 XPO6Q96QU8 1125 aaKnown RBP13.92□□□□□ -0.18
LINC00540-202ENST00000616974 CNPY3Q9BT09 278 aa13.92□□□□□ -0.18
LINC00540-202ENST00000616974 CIPCQ9C0C6 399 aa13.92□□□□□ -0.18
LINC00540-202ENST00000616974 SALL4Q9UJQ4 1053 aa13.92□□□□□ -0.18
LINC00540-202ENST00000616974 A0A0D9SEW6 157 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 CYBBP04839 570 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 GLDCP23378 1020 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 MIPP30301 263 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 IL12RB1P42701 662 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 STK19P49842 368 aaPredicted RBP13.91□□□□□ -0.18
LINC00540-202ENST00000616974 PTPRNQ16849 979 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 ATP13A4Q4VNC1 1196 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 STRADAQ7RTN6 431 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 HJURPQ8NCD3 748 aaPredicted RBP13.91□□□□□ -0.18
LINC00540-202ENST00000616974 ACRBPQ8NEB7 543 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 MYO19Q96H55 970 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 RPL10LQ96L21 214 aaKnown RBP13.91□□□□□ -0.18
LINC00540-202ENST00000616974 RRN3Q9NYV6 651 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 ANAPC7Q9UJX3 599 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 GGA2Q9UJY4 613 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 SLC27A6Q9Y2P4 619 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 MFHAS1Q9Y4C4 1052 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 HYOU1Q9Y4L1 999 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 ANKRD62A6NC57 917 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 LRIG2O94898 1065 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 LUC7L3O95232 432 aaKnown RBP13.91□□□□□ -0.18
LINC00540-202ENST00000616974 TPM1P09493 284 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 CSKP41240 450 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 BRMS1LQ5PSV4 323 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 FAM182AQ5T1J6 154 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 MANEALQ5VSG8 457 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 CHST9Q7L1S5 443 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms