RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ZNF276Q8N554 614 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 ANKRD49Q8WVL7 239 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 SLC5A5Q92911 643 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 TP53INP1Q96A56 240 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 ZUFSPQ96AP4 578 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 METTL2AQ96IZ6 378 aaKnown RBP10.48□□□□□ -0.73
VPS39-214ENST00000614932 MAP6Q96JE9 813 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 NLRP4Q96MN2 994 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 FERD3LQ96RJ6 166 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 FRMD8Q9BZ67 464 aaPredicted RBP10.48□□□□□ -0.73
VPS39-214ENST00000614932 DEFB129Q9H1M3 183 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 EHMT1Q9H9B1 1298 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 OSGEPQ9NPF4 335 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 TXNDC16Q9P2K2 825 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 UBA2Q9UBT2 640 aaPredicted RBP10.48□□□□□ -0.73
VPS39-214ENST00000614932 PGAP2Q9UHJ9 254 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 POLIQ9UNA4 740 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 TRAF6Q9Y4K3 522 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 ACOX3O15254 700 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 DYNC1LI2O43237 492 aaPredicted RBP10.48□□□□□ -0.73
VPS39-214ENST00000614932 CALUO43852 315 aaPredicted RBP10.48□□□□□ -0.73
VPS39-214ENST00000614932 JRKO75564 520 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 GSTM1P09488 218 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 KRT10P13645 584 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 GRK2P25098 689 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 WEE1P30291 646 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 PKLRP30613 574 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 SLC26A2P50443 739 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 AARS2Q5JTZ9 985 aaKnown RBP10.48□□□□□ -0.73
VPS39-214ENST00000614932 UBE2UQ5VVX9 321 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 PLA2G4FQ68DD2 849 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 PGM2L1Q6PCE3 622 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 CHERPQ8IWX8 916 aaKnown RBP10.48□□□□□ -0.73
VPS39-214ENST00000614932 ZDHHC14Q8IZN3 488 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 LILRB2Q8N423 598 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 ASCC1Q8N9N2 400 aaKnown RBP10.48□□□□□ -0.73
VPS39-214ENST00000614932 SLC35G2Q8TBE7 412 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 SLC16A10Q8TF71 515 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 ATG4CQ96DT6 458 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 TEPSINQ96N21 525 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 MXRA8Q9BRK3 442 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 SP140LQ9H930 580 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 SNTG2Q9NY99 539 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 GCNT4Q9P109 453 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 DNAJC12Q9UKB3 198 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 RNF11Q9Y3C5 154 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 H3BUI4 141 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 ICAM1P05362 532 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 ABHD2P08910 425 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 KRT3P12035 628 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 GABRB3P28472 473 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 PTGER2P43116 358 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 KCNJ1P48048 391 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 FCHO2Q0JRZ9 810 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 ADAMTSL2Q86TH1 951 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 FAM160B2Q86V87 743 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 DEPDC4Q8N2C3 294 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 GRIN3AQ8TCU5 1115 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 CLEC4DQ8WXI8 215 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 RMND5BQ96G75 393 aaPredicted RBP10.48□□□□□ -0.73
VPS39-214ENST00000614932 KIFC3Q9BVG8 833 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 GANQ9H2C0 597 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 CCSER2Q9H7U1 834 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 SCPEP1Q9HB40 452 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 SSU72Q9NP77 194 aaKnown RBP10.48□□□□□ -0.73
VPS39-214ENST00000614932 THG1LQ9NWX6 298 aaKnown RBP10.48□□□□□ -0.73
VPS39-214ENST00000614932 POMPQ9Y244 141 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 NCANO14594 1321 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 TRIM64BA6NI03 449 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 MEI4A8MW99 385 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 UCHL3P15374 230 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 GCAP28676 217 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 GALCP54803 685 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 HMGCS2P54868 508 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 SLC25A3Q00325 362 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 GNA13Q14344 377 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 UGCGQ16739 394 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 ARHGAP44Q17R89 818 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 PGS1Q32NB8 556 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 PERM1Q5SV97 790 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 FAM83AQ86UY5 434 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 RFFLQ8WZ73 363 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 HERVK_113Q902F9 699 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 TRIB2Q92519 343 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 CDKL2Q92772 493 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 TRIM63Q969Q1 353 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 CCDC124Q96CT7 223 aaKnown RBP10.47□□□□□ -0.73
VPS39-214ENST00000614932 FAM84AQ96KN4 292 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 ZNF717Q9BY31 904 aaPredicted RBP10.47□□□□□ -0.73
VPS39-214ENST00000614932 OR2B2Q9GZK3 357 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 CXorf21Q9HAI6 301 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 GIMAP4Q9NUV9 329 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 ASIC3Q9UHC3 531 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 POLHQ9Y253 713 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 K7ENM7 598 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 ATP2A1O14983 1001 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 ZW10O43264 779 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 TGM1P22735 817 aa10.47□□□□□ -0.73
VPS39-214ENST00000614932 TBXAS1P24557 533 aaPredicted RBP10.47□□□□□ -0.73
VPS39-214ENST00000614932 DCKP27707 260 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms