RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 GFPT1Q06210 699 aaPredicted RBP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 NR1H3Q13133 447 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 STILQ15468 1287 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 MFN1Q8IWA4 741 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 CCAR2Q8N163 923 aaKnown RBP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 PGBD3Q8N328 593 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 NT5C3BQ969T7 300 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 PLD4Q96BZ4 506 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 NAT10Q9H0A0 1025 aaKnown RBP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 ELOVL2Q9NXB9 296 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 STOML2Q9UJZ1 356 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 MMP17Q9ULZ9 603 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 CYP8B1Q9UNU6 501 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 SLC8A2Q9UPR5 921 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 C2CD4BA6NLJ0 364 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 SLC9A3R1O14745 358 aaPredicted RBP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 CCP110O43303 1012 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 HSF2BPO75031 334 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 DAB1O75553 588 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 FBXO21O94952 628 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 COPAP53621 1224 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 SIM2Q14190 667 aaPredicted RBP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 LLGL1Q15334 1064 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 ATP13A4Q4VNC1 1196 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 KCNT1Q5JUK3 1230 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 SCML4Q8N228 414 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 ZNF276Q8N554 614 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 OR7D4Q8NG98 312 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 FUBP1Q96AE4 644 aaKnown RBP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 MRGPRX3Q96LB0 322 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 MRGPRX1Q96LB2 322 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 THAP2Q9H0W7 228 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 ARRDC1-AS1Q9H2J1 176 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 TSPY26PQ9H489 355 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 GOLPH3Q9H4A6 298 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 SPTLC3Q9NUV7 552 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 ZSCAN32Q9NX65 697 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 PCSK1NQ9UHG2 260 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 GGA2Q9UJY4 613 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 HBS1LQ9Y450 684 aaKnown RBP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 SMTNL1A8MU46 457 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 MAP3K6O95382 1288 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 EPHX1P07099 455 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 ACADSBP45954 432 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 MLLT6P55198 1093 aaPredicted RBP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 DEUP1Q05D60 604 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 SMTNL2Q2TAL5 461 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 MBLAC2Q68D91 279 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 CYP4V2Q6ZWL3 525 aaPredicted RBP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 BNIPLQ7Z465 357 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 DDX42Q86XP3 938 aaKnown RBP eCLIP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 MCOLN2Q8IZK6 566 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 ARHGAP18Q8N392 663 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 TSTD1Q8NFU3 115 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 OR6K2Q8NGY2 324 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 IPO4Q8TEX9 1081 aaKnown RBP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 SERPINB11Q96P15 392 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 RPRD1AQ96P16 312 aaPredicted RBP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 DUSP15Q9H1R2 295 aaPredicted RBP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 FAM124BQ9H5Z6 455 aaPredicted RBP5.89□□□□□ -1.47
CPNE3-208ENST00000614678 DNAI1Q9UI46 699 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 ZMYM5Q9UJ78 669 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 SARDHQ9UL12 918 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 HYOU1Q9Y4L1 999 aa5.89□□□□□ -1.47
CPNE3-208ENST00000614678 TTC24A2A3L6 582 aaPredicted RBP5.88□□□□□ -1.47
CPNE3-208ENST00000614678 LMNAP02545 664 aaKnown RBP5.88□□□□□ -1.47
CPNE3-208ENST00000614678 FTLP02792 175 aaPredicted RBP5.88□□□□□ -1.47
CPNE3-208ENST00000614678 PFKLP17858 780 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 IL1R2P27930 398 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 NOS2P35228 1153 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 CHKAP35790 457 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 ACVRL1P37023 503 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 MAMLD1Q13495 774 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 LRRC32Q14392 662 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 PPP1R15BQ5SWA1 713 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 SCYL2Q6P3W7 929 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 DRC7Q8IY82 874 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 FAM172AQ8WUF8 416 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 ALG14Q96F25 216 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.88□□□□□ -1.47
CPNE3-208ENST00000614678 WDCPQ9H6R7 721 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 KLHL11Q9NVR0 708 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 RPP40O75818 363 aaKnown RBP5.88□□□□□ -1.47
CPNE3-208ENST00000614678 PABPC1P11940 636 aaKnown RBP5.88□□□□□ -1.47
CPNE3-208ENST00000614678 KRT3P12035 628 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 ITPKAP23677 461 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 NSFP46459 744 aaKnown RBP5.88□□□□□ -1.47
CPNE3-208ENST00000614678 CXCR3P49682 368 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 CDK17Q00537 523 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 KLHL30Q0D2K2 578 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 SLC25A52Q3SY17 297 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 LRRC73Q5JTD7 316 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 EFHC1Q5JVL4 640 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 B4GALNT4Q76KP1 1039 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 SLC41A1Q8IVJ1 513 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 CPXM2Q8N436 756 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 GOLGA1Q92805 767 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 VOPP1Q96AW1 172 aa5.88□□□□□ -1.47
CPNE3-208ENST00000614678 OLA1Q9NTK5 396 aaKnown RBP5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms