RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 RASSF3Q86WH2 238 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 HMGB4Q8WW32 186 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 RUBCNQ92622 972 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 C1orf74Q96LT6 269 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 PRICKLE1Q96MT3 831 aaPredicted RBP19.99■□□□□ 0.79
UPF1-212ENST00000601689 GABRG3Q99928 467 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 MRPL47Q9HD33 250 aaKnown RBP19.99■□□□□ 0.79
UPF1-212ENST00000601689 ZDHHC4Q9NPG8 344 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 CACNA2D2Q9NY47 1150 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 CLEC4EQ9ULY5 219 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 SMG5Q9UPR3 1016 aaKnown RBP19.99■□□□□ 0.79
UPF1-212ENST00000601689 HS3ST4Q9Y661 456 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 C2CD4BA6NLJ0 364 aa19.98■□□□□ 0.79
UPF1-212ENST00000601689 ADAM23O75077 832 aa19.98■□□□□ 0.79
UPF1-212ENST00000601689 CLDN11O75508 207 aa19.98■□□□□ 0.79
UPF1-212ENST00000601689 RHOBTB1O94844 696 aa19.98■□□□□ 0.79
UPF1-212ENST00000601689 DLDP09622 509 aaKnown RBP19.98■□□□□ 0.79
UPF1-212ENST00000601689 MYBL1P10243 752 aa19.98■□□□□ 0.79
UPF1-212ENST00000601689 SKILP12757 684 aa19.98■□□□□ 0.79
UPF1-212ENST00000601689 HOXD11P31277 338 aaPredicted RBP19.98■□□□□ 0.79
UPF1-212ENST00000601689 SULT2A1Q06520 285 aa19.98■□□□□ 0.79
UPF1-212ENST00000601689 PTP4A2Q12974 167 aa19.98■□□□□ 0.79
UPF1-212ENST00000601689 ZNF234Q14588 700 aa19.98■□□□□ 0.79
UPF1-212ENST00000601689 ELF2Q15723 593 aa19.98■□□□□ 0.79
UPF1-212ENST00000601689 FBXL22Q6P050 247 aa19.98■□□□□ 0.79
UPF1-212ENST00000601689 ZNF571Q7Z3V5 609 aaPredicted RBP19.98■□□□□ 0.79
UPF1-212ENST00000601689 SUN2Q9UH99 717 aa19.98■□□□□ 0.79
UPF1-212ENST00000601689 SCINQ9Y6U3 715 aa19.98■□□□□ 0.79
UPF1-212ENST00000601689 HRO43593 1189 aa19.97■□□□□ 0.79
UPF1-212ENST00000601689 ZNF217O75362 1048 aa19.97■□□□□ 0.79
UPF1-212ENST00000601689 ENDOD1O94919 500 aa19.97■□□□□ 0.79
UPF1-212ENST00000601689 ADCY5O95622 1261 aa19.97■□□□□ 0.79
UPF1-212ENST00000601689 FTLP02792 175 aaPredicted RBP19.97■□□□□ 0.79
UPF1-212ENST00000601689 RFC1P35251 1148 aaPredicted RBP19.97■□□□□ 0.79
UPF1-212ENST00000601689 CDH4P55283 916 aa19.97■□□□□ 0.79
UPF1-212ENST00000601689 LMAN2Q12907 356 aa19.97■□□□□ 0.79
UPF1-212ENST00000601689 CCDC14Q49A88 953 aa19.97■□□□□ 0.79
UPF1-212ENST00000601689 LAIR1Q6GTX8 287 aa19.97■□□□□ 0.79
UPF1-212ENST00000601689 ASCL5Q7RTU5 278 aa19.97■□□□□ 0.79
UPF1-212ENST00000601689 KIAA0907Q7Z7F0 614 aaPredicted RBP19.97■□□□□ 0.79
UPF1-212ENST00000601689 FAM131BQ86XD5 332 aa19.97■□□□□ 0.79
UPF1-212ENST00000601689 CCAR2Q8N163 923 aaKnown RBP19.97■□□□□ 0.79
UPF1-212ENST00000601689 GPR161Q8N6U8 529 aaKnown RBP19.97■□□□□ 0.79
UPF1-212ENST00000601689 MDGA1Q8NFP4 955 aa19.97■□□□□ 0.79
UPF1-212ENST00000601689 FAM172AQ8WUF8 416 aa19.97■□□□□ 0.79
UPF1-212ENST00000601689 MCEEQ96PE7 176 aa19.97■□□□□ 0.79
UPF1-212ENST00000601689 PRMT1Q99873 361 aaKnown RBP19.97■□□□□ 0.79
UPF1-212ENST00000601689 POLR3BQ9NW08 1133 aaPredicted RBP19.97■□□□□ 0.79
UPF1-212ENST00000601689 SPAG17Q6Q759 2223 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 MAP3K13O43283 966 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 EPHX1P07099 455 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 RRM1P23921 792 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 CASP14P31944 242 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 CD70P32970 193 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 ZNF143P52747 638 aaPredicted RBP19.96■□□□□ 0.79
UPF1-212ENST00000601689 RNF43Q68DV7 783 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 WDR59Q6PJI9 974 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 OR8K1Q8NGG5 319 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 JOSD2Q8TAC2 188 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 ACOX2Q99424 681 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 NCAPGQ9BPX3 1015 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 TPSD1Q9BZJ3 242 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 TRIM5Q9C035 493 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 DEF6Q9H4E7 631 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 FBRSQ9HAH7 460 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 ADAMTS1Q9UHI8 967 aa19.96■□□□□ 0.79
UPF1-212ENST00000601689 SRGAP2O75044 1071 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 RNF8O76064 485 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 GYPCP04921 128 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 SRPRAP08240 638 aaKnown RBP19.95■□□□□ 0.78
UPF1-212ENST00000601689 ACADMP11310 421 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 TFE3P19532 575 aaPredicted RBP19.95■□□□□ 0.78
UPF1-212ENST00000601689 IL12RB1P42701 662 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 AIF1P55008 147 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 C15orf59Q2T9L4 293 aaPredicted RBP19.95■□□□□ 0.78
UPF1-212ENST00000601689 C6orf118Q5T5N4 469 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 SCYL2Q6P3W7 929 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 ADIPOR2Q86V24 386 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 DRC7Q8IY82 874 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 SUMF1Q8NBK3 374 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 CYB5D2Q8WUJ1 264 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 ZNF653Q96CK0 615 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 P2RY11Q96G91 374 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 CNPY3Q9BT09 278 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 SYT11Q9BT88 431 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 RETREG1Q9H6L5 497 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 CALCOCO1Q9P1Z2 691 aa19.95■□□□□ 0.78
UPF1-212ENST00000601689 CNOT8Q9UFF9 292 aaKnown RBP19.95■□□□□ 0.78
UPF1-212ENST00000601689 RALGAPA1Q6GYQ0 2036 aa19.94■□□□□ 0.78
UPF1-212ENST00000601689 ANTXRLA6NF34 631 aa19.94■□□□□ 0.78
UPF1-212ENST00000601689 DDX3XO00571 662 aaKnown RBP eCLIP19.94■□□□□ 0.78
UPF1-212ENST00000601689 CSKP41240 450 aa19.94■□□□□ 0.78
UPF1-212ENST00000601689 KRT83P78385 493 aa19.94■□□□□ 0.78
UPF1-212ENST00000601689 ECT2LQ008S8 904 aa19.94■□□□□ 0.78
UPF1-212ENST00000601689 PITRM1Q5JRX3 1037 aa19.94■□□□□ 0.78
UPF1-212ENST00000601689 EFHC2Q5JST6 749 aa19.94■□□□□ 0.78
UPF1-212ENST00000601689 OTUD1Q5VV17 481 aaPredicted RBP19.94■□□□□ 0.78
UPF1-212ENST00000601689 TMEM215Q68D42 235 aa19.94■□□□□ 0.78
UPF1-212ENST00000601689 SLC36A4Q6YBV0 504 aa19.94■□□□□ 0.78
UPF1-212ENST00000601689 BNIPLQ7Z465 357 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms