RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	NFE2L3	Q9Y4A8	694 aa		18.23	■□□□□ 0.51
SHKBP1-223	ENST00000600552	SNX11	Q9Y5W9	270 aa		18.23	■□□□□ 0.51
SHKBP1-223	ENST00000600552	SRRM3	A6NNA2	597 aa	Predicted RBP	18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	SIN3B	O75182	1162 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	APOE	P02649	317 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	GPD2	P43304	727 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	ACADSB	P45954	432 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	AFF3	P51826	1226 aa	Known RBP	18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	RING1	Q06587	406 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	DCAF6	Q58WW2	860 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	FSCB	Q5H9T9	825 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	MS4A13	Q5J8X5	152 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	MPP7	Q5T2T1	576 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	IL27RA	Q6UWB1	636 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	RAB44	Q7Z6P3	723 aa	Predicted RBP	18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	SLCO6A1	Q86UG4	719 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	CHSY1	Q86X52	802 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	BIRC7	Q96CA5	298 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	TM9SF3	Q9HD45	589 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	FBXL12	Q9NXK8	326 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	TJP2	Q9UDY2	1190 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	PCOLCE2	Q9UKZ9	415 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	APOBEC2	Q9Y235	224 aa	Known RBP	18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	TLR6	Q9Y2C9	796 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	CHD6	Q8TD26	2715 aa		18.22	■□□□□ 0.51
SHKBP1-223	ENST00000600552	TTC34	A8MYJ7	566 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552		E5RJQ4	531 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	SART1	O43290	800 aa	Known RBP	18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	MED7	O43513	233 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	RNASEH1	O60930	286 aa	Known RBP	18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	MOCS3	O95396	460 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	GNA15	P30679	374 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	IL9R	Q01113	521 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	TAF5	Q15542	800 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	PITRM1	Q5JRX3	1037 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	RNF219	Q5W0B1	726 aa	Predicted RBP	18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	MMAA	Q8IVH4	418 aa	Known RBP	18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	C1orf216	Q8TAB5	229 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	ZNF606	Q8WXB4	792 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	RNF34	Q969K3	372 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	AZIN2	Q96A70	460 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	RPL10L	Q96L21	214 aa	Known RBP	18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	FBRS	Q9HAH7	460 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	INTS6	Q9UL03	887 aa	Known RBP	18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	ERVW-1	Q9UQF0	538 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	ANKRD6	Q9Y2G4	727 aa		18.21	■□□□□ 0.51
SHKBP1-223	ENST00000600552	TMEM131	Q92545	1883 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	MID1	O15344	667 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PAPSS1	O43252	624 aa	Predicted RBP	18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	RNASEH2A	O75792	299 aa	Known RBP	18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	LUC7L3	O95232	432 aa	Known RBP	18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	TACR2	P21452	398 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PSMD8	P48556	350 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	APBA1	Q02410	837 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	ZBTB16	Q05516	673 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CAMK4	Q16566	473 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CIR1	Q86X95	450 aa	Predicted RBP	18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PASD1	Q8IV76	773 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	ELOA2	Q8IYF1	753 aa	Predicted RBP	18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	APCDD1	Q8J025	514 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	ZNF557	Q8N988	423 aa	Predicted RBP	18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	TTC17	Q96AE7	1141 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	LMLN	Q96KR4	655 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	OMD	Q99983	421 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PCED1A	Q9H1Q7	454 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	RSPH9	Q9H1X1	276 aa	Predicted RBP	18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PABPC3	Q9H361	631 aa	Known RBP	18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	FAM204A	Q9H8W3	233 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SGK2	Q9HBY8	427 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CYTH4	Q9UIA0	394 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SLCO3A1	Q9UIG8	710 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	BTBD3	Q9Y2F9	522 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CFAP47	Q6ZTR5	3102 aa		18.2	■□□□□ 0.5
SHKBP1-223	ENST00000600552	MUC22	E2RYF6	1773 aa	Predicted RBP	18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CABIN1	Q9Y6J0	2220 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552		A0A1W2PP55	124 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	GRAP2	O75791	330 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	FGFR1OP	O95684	399 aa	Known RBP	18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	TRUB2	O95900	331 aa	Known RBP	18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	ASL	P04424	464 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	ATXN1L	P0C7T5	689 aa	Known RBP	18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SLC9A1	P19634	815 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CD27	P26842	260 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	YWHAZ	P63104	245 aa	Known RBP	18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PITX1	P78337	314 aa	Predicted RBP	18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SUZ12	Q15022	739 aa	Known RBP	18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	HNRNPA1L2	Q32P51	320 aa	Known RBP	18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PRAMEF14	Q5SWL7	426 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	KIAA0895L	Q68EN5	471 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	ADAMTS14	Q8WXS8	1223 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SLC39A13	Q96H72	371 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	MRGPRX3	Q96LB0	322 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SLC4A5	Q9BY07	1137 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	POPDC2	Q9HBU9	364 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	KIAA1522	Q9P206	1035 aa	Predicted RBP	18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	SERGEF	Q9UGK8	458 aa		18.19	■□□□□ 0.5
SHKBP1-223	ENST00000600552	FAM170A	A1A519	330 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552		F5H5T6	163 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	CBFA2T3	O75081	653 aa		18.18	■□□□□ 0.5
SHKBP1-223	ENST00000600552	PDGFRA	P16234	1089 aa		18.18	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms