RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 MMGT1Q8N4V1 131 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 ARMC2Q8NEN0 867 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 KCNK16Q96T55 309 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 PCDHB18PQ96TA0 734 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 RPS6KL1Q9Y6S9 549 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 MSI1O43347 362 aaKnown RBP10.08□□□□□ -0.8
LIG3-216ENST00000593099 CYP2A6P11509 494 aaPredicted RBP10.08□□□□□ -0.8
LIG3-216ENST00000593099 MAGEA4P43358 317 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 SULT2A1Q06520 285 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 NNTQ13423 1086 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 USP10Q14694 798 aaKnown RBP10.08□□□□□ -0.8
LIG3-216ENST00000593099 POLNQ7Z5Q5 900 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 XYLT1Q86Y38 959 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 GSPT2Q8IYD1 628 aaKnown RBP10.08□□□□□ -0.8
LIG3-216ENST00000593099 JOSD2Q8TAC2 188 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 GBP5Q96PP8 586 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 C1QTNF7Q9BXJ2 289 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 VCX3BQ9H321 246 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 RABEP2Q9H5N1 569 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 VCX3AQ9NNX9 186 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 OGDHLQ9ULD0 1010 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 DRG1Q9Y295 367 aaKnown RBP10.08□□□□□ -0.8
LIG3-216ENST00000593099 VIRMAQ69YN4 1812 aaKnown RBP10.08□□□□□ -0.8
LIG3-216ENST00000593099 SBF2Q86WG5 1849 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 NCANO14594 1321 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 WDR91A4D1P6 747 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 TMEM191CA6NGB0 347 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 NEDD8-MDP1E9PL57 170 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 CTIFO43310 598 aaKnown RBP10.08□□□□□ -0.8
LIG3-216ENST00000593099 SOAT2O75908 522 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 TMPRSS15P98073 1019 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 MTM1Q13496 603 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 ANKRD20A8PQ5CZ79 823 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 GRAMD4Q6IC98 578 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 KIAA1324Q6UXG2 1013 aaKnown RBP10.08□□□□□ -0.8
LIG3-216ENST00000593099 RFX8Q6ZV50 586 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 TTC17Q96AE7 1141 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 OMDQ99983 421 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 ZNF670Q9BS34 389 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 STN1Q9H668 368 aaKnown RBP10.08□□□□□ -0.8
LIG3-216ENST00000593099 PCDH9Q9HC56 1237 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 DZANK1Q9NVP4 752 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 UBP1Q9NZI7 540 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 DNAJB4Q9UDY4 337 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 FAM153AQ9UHL3 310 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 ARIH1Q9Y4X5 557 aaPredicted RBP10.08□□□□□ -0.8
LIG3-216ENST00000593099 TAF1LQ8IZX4 1826 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 RNF103O00237 685 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 NOL4O94818 638 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 HSPA4LO95757 839 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 ERCC2P18074 760 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 VCLP18206 1134 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 CHRM3P20309 590 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 FSHRP23945 695 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 BMPR1AP36894 532 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 PBX1P40424 430 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 ARL4DP49703 201 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 HDAC4P56524 1084 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 GKAP1Q5VSY0 366 aaPredicted RBP10.07□□□□□ -0.8
LIG3-216ENST00000593099 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.07□□□□□ -0.8
LIG3-216ENST00000593099 FAM126BQ8IXS8 530 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 PDLIM7Q9NR12 457 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 MAN1C1Q9NR34 630 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 TADA3O75528 432 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 HOXA11P31270 313 aaPredicted RBP10.07□□□□□ -0.8
LIG3-216ENST00000593099 CLCN6P51797 869 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 C3orf62Q6ZUJ4 267 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 OTOP3Q7RTS5 596 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 SPATS2Q86XZ4 545 aaKnown RBP10.07□□□□□ -0.8
LIG3-216ENST00000593099 TRIM48Q8IWZ4 208 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 TBC1D19Q8N5T2 526 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 CCNYL1Q8N7R7 359 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 TIFAQ96CG3 184 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 ELMO2Q96JJ3 720 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 FAM210AQ96ND0 272 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 RNF157Q96PX1 679 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 DUS2Q9NX74 493 aaKnown RBP10.07□□□□□ -0.8
LIG3-216ENST00000593099 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.07□□□□□ -0.8
LIG3-216ENST00000593099 FLT3P36888 993 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 HSPA9P38646 679 aaKnown RBP10.07□□□□□ -0.8
LIG3-216ENST00000593099 SPARCL1Q14515 664 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 FAM46CQ5VWP2 391 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 PLEKHA7Q6IQ23 1121 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 NAT16Q8N8M0 369 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 NDRG1Q92597 394 aaKnown RBP10.07□□□□□ -0.8
LIG3-216ENST00000593099 CAPS2Q9BXY5 557 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 CEP41Q9BYV8 373 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 PPCSQ9HAB8 311 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 COMMD8Q9NX08 183 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 PCDHGC5Q9Y5F6 944 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 PIRO00625 290 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 ACSL4O60488 711 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 CIB2O75838 187 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 STAU1O95793 577 aaKnown RBP10.07□□□□□ -0.8
LIG3-216ENST00000593099 ATXN3P54252 364 aaPredicted RBP10.07□□□□□ -0.8
LIG3-216ENST00000593099 PLEKHG4Q58EX7 1191 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 PPP4R4Q6NUP7 873 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 FNIP1Q8TF40 1166 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 NKX2-4Q9H2Z4 354 aa10.07□□□□□ -0.8
LIG3-216ENST00000593099 FAF1Q9UNN5 650 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms