RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 ITGB1P05556 798 aa20.24■□□□□ 0.83
CLIP3-206ENST00000593074 TYMPP19971 482 aa20.24■□□□□ 0.83
CLIP3-206ENST00000593074 PPIDQ08752 370 aaKnown RBP20.24■□□□□ 0.83
CLIP3-206ENST00000593074 OTOAQ7RTW8 1153 aa20.24■□□□□ 0.83
CLIP3-206ENST00000593074 TAC4Q86UU9 113 aa20.24■□□□□ 0.83
CLIP3-206ENST00000593074 ANKLE1Q8NAG6 615 aa20.24■□□□□ 0.83
CLIP3-206ENST00000593074 TMEM209Q96SK2 561 aa20.24■□□□□ 0.83
CLIP3-206ENST00000593074 TRIM62Q9BVG3 475 aa20.24■□□□□ 0.83
CLIP3-206ENST00000593074 BRD8Q9H0E9 1235 aa20.24■□□□□ 0.83
CLIP3-206ENST00000593074 WDCPQ9H6R7 721 aa20.24■□□□□ 0.83
CLIP3-206ENST00000593074 UGT1A9O60656 530 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 KRT38O76015 456 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 GRK4P32298 578 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 TSPY1Q01534 308 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 LRRTM3Q86VH5 581 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 CCNJLQ8IV13 435 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 URGCPQ8TCY9 931 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 EPAS1Q99814 870 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 TKTL2Q9H0I9 626 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 UGT1A7Q9HAW7 530 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 UGT1A10Q9HAW8 530 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 UGT1A8Q9HAW9 530 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 HTTP42858 3142 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 WDR27A2RRH5 827 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 RFPL1O75677 317 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 IGLV3-25P01717 112 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 PTPN3P26045 913 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 SERPINB9P50453 376 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 APLP1P51693 650 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 NCALDP61601 193 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 NOMO2Q5JPE7 1267 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 C10orf82Q8WW14 230 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 ARNTL2Q8WYA1 636 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 HDAC11Q96DB2 347 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 FAM111AQ96PZ2 611 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 SRPK1Q96SB4 655 aaKnown RBP20.23■□□□□ 0.83
CLIP3-206ENST00000593074 OR12D3Q9UGF7 316 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 PCDHB8Q9UN66 801 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 USH1CQ9Y6N9 552 aa20.23■□□□□ 0.83
CLIP3-206ENST00000593074 MYO18AQ92614 2054 aaKnown RBP20.22■□□□□ 0.83
CLIP3-206ENST00000593074 COPEO14579 308 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 FKTNO75072 461 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 DDHD2O94830 711 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 GALNT2Q10471 571 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 IFRD2Q12894 506 aaPredicted RBP20.22■□□□□ 0.83
CLIP3-206ENST00000593074 MARK2Q7KZI7 788 aaKnown RBP20.22■□□□□ 0.83
CLIP3-206ENST00000593074 ZNF280BQ86YH2 543 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 DQX1Q8TE96 717 aaKnown RBP20.22■□□□□ 0.83
CLIP3-206ENST00000593074 LINC01599Q8WXQ3 324 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 TTC17Q96AE7 1141 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 NAT9Q9BTE0 207 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 FTHL17Q9BXU8 183 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 MANSC1Q9H8J5 431 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 PHF24Q9UPV7 400 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 HMX2A2RU54 273 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 F8W810 466 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 KCNK1O00180 336 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 PGAM1P18669 254 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 HNRNPH1P31943 449 aaKnown RBP20.22■□□□□ 0.83
CLIP3-206ENST00000593074 SERPINB6P35237 376 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 YWHAHQ04917 246 aaPredicted RBP20.22■□□□□ 0.83
CLIP3-206ENST00000593074 NIPAL4Q0D2K0 466 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 EIF4EBP2Q13542 120 aaPredicted RBP20.22■□□□□ 0.83
CLIP3-206ENST00000593074 CLLU1OSQ5K130 101 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 DEPDC1BQ8WUY9 529 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 PTPRN2Q92932 1015 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 GORASP1Q9BQQ3 440 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 KANSL3Q9P2N6 904 aa20.22■□□□□ 0.83
CLIP3-206ENST00000593074 WDR91A4D1P6 747 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 CFAP73A6NFT4 308 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 MTSS1O43312 755 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 LRIG2O94898 1065 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 MX2P20592 715 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 CNTFP26441 200 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 MGAT1P26572 445 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 PRMT2P55345 433 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 CRADDP78560 199 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 DSC1Q08554 894 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 BMPR2Q13873 1038 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 CDHR3Q6ZTQ4 885 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 PID1Q7Z2X4 250 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 ZNF398Q8TD17 642 aa20.21■□□□□ 0.83
CLIP3-206ENST00000593074 KLHL8Q9P2G9 620 aaPredicted RBP20.21■□□□□ 0.83
CLIP3-206ENST00000593074 SELPP16109 830 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 GARSP41250 739 aaKnown RBP20.2■□□□□ 0.82
CLIP3-206ENST00000593074 SESN2P58004 480 aaPredicted RBP20.2■□□□□ 0.82
CLIP3-206ENST00000593074 CRYMQ14894 314 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 FYB2Q5VWT5 728 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 CASC4Q6P4E1 433 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 CYB5D1Q6P9G0 228 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 LRRC8DQ7L1W4 858 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 SCAMP5Q8TAC9 235 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 IQCGQ9H095 443 aaKnown RBP20.2■□□□□ 0.82
CLIP3-206ENST00000593074 ECT2Q9H8V3 914 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 KLC4Q9NSK0 619 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 NEU3Q9UQ49 428 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 PLLPQ9Y342 182 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 SNX10Q9Y5X0 201 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 CEP350Q5VT06 3117 aa20.2■□□□□ 0.82
CLIP3-206ENST00000593074 AP2A1O95782 977 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms