RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 ZYG11BQ9C0D3 744 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 C8orf33Q9H7E9 229 aaPredicted RBP14.05□□□□□ -0.16
VMP1-210ENST00000589823 PCDH18Q9HCL0 1135 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 KLHL11Q9NVR0 708 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 PLK2Q9NYY3 685 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 PCDHA3Q9Y5H8 950 aa14.05□□□□□ -0.16
VMP1-210ENST00000589823 IGLV3-10A0A075B6K4 115 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 LRRD1A4D1F6 860 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 OTOL1A6NHN0 477 aaPredicted RBP14.04□□□□□ -0.16
VMP1-210ENST00000589823 H0Y626 953 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 FGF10O15520 208 aaPredicted RBP14.04□□□□□ -0.16
VMP1-210ENST00000589823 CLDN11O75508 207 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 GLULP15104 373 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 KDELR1P24390 212 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 HOXD9P28356 352 aaPredicted RBP14.04□□□□□ -0.16
VMP1-210ENST00000589823 GJA4P35212 333 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 CDH4P55283 916 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 RWDD2BP57060 319 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 SEMA3BQ13214 749 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 C5orf22Q49AR2 442 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 ZNF569Q5MCW4 686 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 CIR1Q86X95 450 aaPredicted RBP14.04□□□□□ -0.16
VMP1-210ENST00000589823 KATNAL2Q8IYT4 538 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 CARNMT1Q8N4J0 409 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 MSANTD3Q96H12 275 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 RBM41Q96IZ5 413 aaKnown RBP14.04□□□□□ -0.16
VMP1-210ENST00000589823 CALN1Q9BXU9 219 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 RETREG1Q9H6L5 497 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 CATSPERBQ9H7T0 1116 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 CD320Q9NPF0 282 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 HEBP1Q9NRV9 189 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 RCOR3Q9P2K3 495 aaPredicted RBP14.04□□□□□ -0.16
VMP1-210ENST00000589823 MUTYHQ9UIF7 546 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 FBXL21Q9UKT6 434 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 PIAS3Q9Y6X2 628 aa14.04□□□□□ -0.16
VMP1-210ENST00000589823 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.03□□□□□ -0.16
VMP1-210ENST00000589823 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.03□□□□□ -0.16
VMP1-210ENST00000589823 PI4K2BG5E9Z4 385 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 CACNG3O60359 315 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 CNTN5O94779 1100 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 ZRANB2O95218 330 aaKnown RBP eCLIP14.03□□□□□ -0.16
VMP1-210ENST00000589823 RHOQP17081 205 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 GOT1P17174 413 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 HOXC13P31276 330 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 CETN2P41208 172 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 HCAR3P49019 387 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 ZNF177Q13360 481 aaPredicted RBP14.03□□□□□ -0.16
VMP1-210ENST00000589823 CDH18Q13634 790 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 PREPLQ4J6C6 727 aaPredicted RBP14.03□□□□□ -0.16
VMP1-210ENST00000589823 SLC44A4Q53GD3 710 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 MEI1Q5TIA1 1274 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 RFX8Q6ZV50 586 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 CHST9Q7L1S5 443 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 RALGPS2Q86X27 583 aaPredicted RBP14.03□□□□□ -0.16
VMP1-210ENST00000589823 MFN1Q8IWA4 741 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 C17orf53Q8N3J3 647 aaPredicted RBP14.03□□□□□ -0.16
VMP1-210ENST00000589823 NAT16Q8N8M0 369 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 FAM71BQ8TC56 605 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 RAPGEF5Q92565 580 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 KRT35Q92764 455 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 RNF25Q96BH1 459 aaPredicted RBP14.03□□□□□ -0.16
VMP1-210ENST00000589823 HES6Q96HZ4 224 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 CSPG4P5Q96PW8 444 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 ZNF670Q9BS34 389 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 SLC2A11Q9BYW1 496 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 DNAJC17Q9NVM6 304 aaKnown RBP14.03□□□□□ -0.16
VMP1-210ENST00000589823 DONSONQ9NYP3 566 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 MPP6Q9NZW5 540 aa14.03□□□□□ -0.16
VMP1-210ENST00000589823 CWC15Q9P013 229 aaKnown RBP14.03□□□□□ -0.16
VMP1-210ENST00000589823 PACSIN2Q9UNF0 486 aaPredicted RBP14.03□□□□□ -0.16
VMP1-210ENST00000589823 SPECC1L-ADORA2AF8WAN1 911 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 LUC7L3O95232 432 aaKnown RBP14.02□□□□□ -0.17
VMP1-210ENST00000589823 CD48P09326 243 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 OR1E1P30953 314 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 EIF2DP41214 584 aaKnown RBP14.02□□□□□ -0.17
VMP1-210ENST00000589823 SOX9P48436 509 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 MARCKSL1P49006 195 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 DGKGP49619 791 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 DNA2P51530 1060 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 IRAK1P51617 712 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 ARSEP51690 589 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 OXCT1P55809 520 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 DPYSL3Q14195 570 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 RPS6KA1Q15418 735 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 MLF2Q15773 248 aaPredicted RBP14.02□□□□□ -0.17
VMP1-210ENST00000589823 ALFQ53S48 1182 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 C1orf228Q6PIY5 440 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 TFAP2DQ7Z6R9 452 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 VSIG1Q86XK7 387 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 CCDC50Q8IVM0 306 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 RCOR2Q8IZ40 523 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 SLC35F6Q8N357 371 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 EXD1Q8NHP7 514 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 MAK16Q9BXY0 300 aaKnown RBP14.02□□□□□ -0.17
VMP1-210ENST00000589823 TMEM248Q9NWD8 314 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 DEC1Q9P2X7 70 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 WNT16Q9UBV4 365 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 CA14Q9ULX7 337 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 JRKLQ9Y4A0 524 aa14.02□□□□□ -0.17
VMP1-210ENST00000589823 MYO10Q9HD67 2058 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms