RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 NDC80O14777 642 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 PPP1R12AO14974 1030 aaPredicted RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 MTSS1O43312 755 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 ECEL1O95672 775 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 MTHFRP42898 656 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 YBEYP58557 167 aaPredicted RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 DYNLT1P63172 113 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 DR1Q01658 176 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 FAM133BQ5BKY9 247 aaKnown RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 RARS2Q5T160 578 aaKnown RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 ARTNQ5T4W7 220 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 RWDD4Q6NW29 188 aaKnown RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 C4orf22Q6V702 233 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 ADAT2Q7Z6V5 191 aaKnown RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 NLRP14Q86W24 1093 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 CDKL3Q8IVW4 592 aaPredicted RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 CCDC105Q8IYK2 499 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 UMODL1-AS1Q8N2C9 162 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 CELF5Q8N6W0 485 aaKnown RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 C12orf76Q8N812 135 aaPredicted RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 ZNF557Q8N988 423 aaPredicted RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 EIF1ADQ8N9N8 165 aaKnown RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 C1orf54Q8WWF1 131 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 FATE1Q969F0 183 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 OLFM3Q96PB7 478 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 RAB17Q9H0T7 212 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 DTLQ9NZJ0 730 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 XPO7Q9UIA9 1087 aaKnown RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 VANGL2Q9ULK5 521 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 R3HDM2Q9Y2K5 976 aaKnown RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 MYO7AQ13402 2215 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 ANAPC1Q9H1A4 1944 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 TYW5A2RUC4 315 aaKnown RBP15.72■□□□□ 0.11
SS18-215ENST00000580642 CLDN11O75508 207 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 RBP3P10745 1247 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 DRG2P55039 364 aaKnown RBP15.72■□□□□ 0.11
SS18-215ENST00000580642 CDH4P55283 916 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 OXCT1P55809 520 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 EIF3EP60228 445 aaKnown RBP15.72■□□□□ 0.11
SS18-215ENST00000580642 RBM10P98175 930 aaKnown RBP15.72■□□□□ 0.11
SS18-215ENST00000580642 AFMIDQ63HM1 303 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 RAP1GAP2Q684P5 730 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 NADSYN1Q6IA69 706 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 ZNF783Q6ZMS7 281 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 KLHL7Q8IXQ5 586 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 SH3RF2Q8TEC5 729 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 RPRD1AQ96P16 312 aaPredicted RBP15.72■□□□□ 0.11
SS18-215ENST00000580642 TSGA13Q96PP4 275 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 MAGEB5Q9BZ81 275 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 FAM129AQ9BZQ8 928 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 S1PR5Q9H228 398 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 SMPD4Q9NXE4 827 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 CLEC1BQ9P126 229 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 CFAP97Q9P2B7 532 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 AMACRQ9UHK6 382 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 DNPEPQ9ULA0 475 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 ZNF148Q9UQR1 794 aa15.72■□□□□ 0.11
SS18-215ENST00000580642 ATG2AQ2TAZ0 1938 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 A0A1B0GVM2 712 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 TCAF2A6NFQ2 919 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 PECAM1P16284 738 aaPredicted RBP15.71■□□□□ 0.11
SS18-215ENST00000580642 GJA1P17302 382 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 CEBPBP17676 345 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 ETFBP38117 255 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 PTGIRP43119 386 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 NTHL1P78549 312 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 ZXDBP98169 803 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 GBE1Q04446 702 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 GALNT2Q10471 571 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 USP4Q13107 963 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 LLGL1Q15334 1064 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 PARP15Q460N3 678 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 SLC45A4Q5BKX6 768 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 TEX35Q5T0J7 233 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 STXBP5Q5T5C0 1151 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 TTC27Q6P3X3 843 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 C14orf80Q86SX3 495 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 ARID3BQ8IVW6 561 aaPredicted RBP15.71■□□□□ 0.11
SS18-215ENST00000580642 NPAS3Q8IXF0 933 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 ALLCQ8N6M5 410 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 CCDC89Q8N998 374 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 HJURPQ8NCD3 748 aaPredicted RBP15.71■□□□□ 0.11
SS18-215ENST00000580642 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.71■□□□□ 0.11
SS18-215ENST00000580642 SMARCD2Q92925 531 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 USP13Q92995 863 aaPredicted RBP15.71■□□□□ 0.11
SS18-215ENST00000580642 HDAC11Q96DB2 347 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 RTP4Q96DX8 246 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 MSLNLQ96KJ4 702 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 LRRC1Q9BTT6 524 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 CDH7Q9ULB5 785 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 UTP11Q9Y3A2 253 aaKnown RBP15.71■□□□□ 0.11
SS18-215ENST00000580642 HEY1Q9Y5J3 304 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 TRANK1O15050 2925 aa15.71■□□□□ 0.11
SS18-215ENST00000580642 OBSL1O75147 1896 aa15.7■□□□□ 0.1
SS18-215ENST00000580642 CXorf51AA0A1B0GTR3 108 aa15.7■□□□□ 0.1
SS18-215ENST00000580642 LINC01565O15544 149 aa15.7■□□□□ 0.1
SS18-215ENST00000580642 ADGRE1Q14246 886 aa15.7■□□□□ 0.1
SS18-215ENST00000580642 ZNF77Q15935 545 aa15.7■□□□□ 0.1
SS18-215ENST00000580642 MPPE1Q53F39 396 aa15.7■□□□□ 0.1
SS18-215ENST00000580642 C6orf118Q5T5N4 469 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms