RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 HS3ST4Q9Y661 456 aa20.14■□□□□ 0.81
SS18-209ENST00000578595 ATP5BP06576 529 aaKnown RBP20.13■□□□□ 0.81
SS18-209ENST00000578595 EPHX1P07099 455 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 CHRM1P11229 460 aaPredicted RBP20.13■□□□□ 0.81
SS18-209ENST00000578595 DESP17661 470 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 GPD1P21695 349 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 PBX1P40424 430 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 IL12RB1P42701 662 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 CXCR3P49682 368 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 PTP4A2Q12974 167 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 EIF4EBP2Q13542 120 aaPredicted RBP20.13■□□□□ 0.81
SS18-209ENST00000578595 AUHQ13825 339 aaKnown RBP20.13■□□□□ 0.81
SS18-209ENST00000578595 FUT11Q495W5 492 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 TTC39BQ5VTQ0 682 aaPredicted RBP20.13■□□□□ 0.81
SS18-209ENST00000578595 TMEM215Q68D42 235 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 PPP1R2P3Q6NXS1 205 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 FBXL22Q6P050 247 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 DCUN1D2Q6PH85 259 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 KIAA1324Q6UXG2 1013 aaKnown RBP20.13■□□□□ 0.81
SS18-209ENST00000578595 CACUL1Q86Y37 369 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 SUMF1Q8NBK3 374 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 C3orf20Q8ND61 904 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 FIBINQ8TAL6 211 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 RUBCNQ92622 972 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 IQCDQ96DY2 449 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 SPACA7Q96KW9 195 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 MCEEQ96PE7 176 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 TAS2R14Q9NYV8 317 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 THAP10Q9P2Z0 257 aaPredicted RBP20.13■□□□□ 0.81
SS18-209ENST00000578595 EBF1Q9UH73 591 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 PLA2G4CQ9UP65 541 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 LUC7L2Q9Y383 392 aaKnown RBP20.13■□□□□ 0.81
SS18-209ENST00000578595 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.13■□□□□ 0.81
SS18-209ENST00000578595 SNX10Q9Y5X0 201 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 WDR87Q6ZQQ6 2873 aa20.13■□□□□ 0.81
SS18-209ENST00000578595 A0A1B0GVM2 712 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 A0A1W2PQJ5 194 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 TCAF2A6NFQ2 919 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 DCLK1O15075 740 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 NPC1O15118 1278 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 ATMINO43313 823 aaPredicted RBP20.12■□□□□ 0.81
SS18-209ENST00000578595 TIMM44O43615 452 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 RRM1P23921 792 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 LAIR1Q6GTX8 287 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 KIAA1211LQ6NV74 962 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 LRRC31Q6UY01 552 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 ZNF571Q7Z3V5 609 aaPredicted RBP20.12■□□□□ 0.81
SS18-209ENST00000578595 VPS36Q86VN1 386 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 RASSF3Q86WH2 238 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 MCOLN2Q8IZK6 566 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 CCAR2Q8N163 923 aaKnown RBP20.12■□□□□ 0.81
SS18-209ENST00000578595 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.12■□□□□ 0.81
SS18-209ENST00000578595 RLN3Q8WXF3 142 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 NT5C3BQ969T7 300 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 PGAP3Q96FM1 320 aaPredicted RBP20.12■□□□□ 0.81
SS18-209ENST00000578595 PRMT1Q99873 361 aaKnown RBP20.12■□□□□ 0.81
SS18-209ENST00000578595 GABRG3Q99928 467 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 TMPRSS4Q9NRS4 437 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 ARHGEF38Q9NXL2 777 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 KIAA1522Q9P206 1035 aaPredicted RBP20.12■□□□□ 0.81
SS18-209ENST00000578595 GON4LQ3T8J9 2241 aa20.12■□□□□ 0.81
SS18-209ENST00000578595 TPM1P09493 284 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 HLA-EP13747 358 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 GABRG2P18507 467 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 RFC1P35251 1148 aaPredicted RBP20.11■□□□□ 0.81
SS18-209ENST00000578595 CSKP41240 450 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 PRKCIP41743 596 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 ST8SIA6P61647 398 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 ZBED6P86452 979 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 ELF2Q15723 593 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 ARL13BQ3SXY8 428 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 CCDC14Q49A88 953 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 FSCBQ5H9T9 825 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 PITRM1Q5JRX3 1037 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 RNF219Q5W0B1 726 aaPredicted RBP20.11■□□□□ 0.81
SS18-209ENST00000578595 ARCQ7LC44 396 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 ADIPOR2Q86V24 386 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 KBTBD6Q86V97 674 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 DCLK2Q8N568 766 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 ZNF366Q8N895 744 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 FAM172AQ8WUF8 416 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 IGSF8Q969P0 613 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 ZNF653Q96CK0 615 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 TMEM51Q9NW97 253 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 MYO15AQ9UKN7 3530 aa20.11■□□□□ 0.81
SS18-209ENST00000578595 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.1■□□□□ 0.81
SS18-209ENST00000578595 C2CD4BA6NLJ0 364 aa20.1■□□□□ 0.81
SS18-209ENST00000578595 MAP3K13O43283 966 aa20.1■□□□□ 0.81
SS18-209ENST00000578595 SRGAP2O75044 1071 aa20.1■□□□□ 0.81
SS18-209ENST00000578595 GYPCP04921 128 aa20.1■□□□□ 0.81
SS18-209ENST00000578595 DLDP09622 509 aaKnown RBP20.1■□□□□ 0.81
SS18-209ENST00000578595 PRKCHP24723 683 aa20.1■□□□□ 0.81
SS18-209ENST00000578595 CASP14P31944 242 aa20.1■□□□□ 0.81
SS18-209ENST00000578595 IRAK1P51617 712 aa20.1■□□□□ 0.81
SS18-209ENST00000578595 GSCP56915 257 aaPredicted RBP20.1■□□□□ 0.81
SS18-209ENST00000578595 ZNF177Q13360 481 aaPredicted RBP20.1■□□□□ 0.81
SS18-209ENST00000578595 SH3PXD2AQ5TCZ1 1133 aa20.1■□□□□ 0.81
SS18-209ENST00000578595 SCYL2Q6P3W7 929 aa20.1■□□□□ 0.81
SS18-209ENST00000578595 WDR59Q6PJI9 974 aa20.1■□□□□ 0.81
SS18-209ENST00000578595 C14orf80Q86SX3 495 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms