RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 COG4Q9H9E3 785 aa16.05■□□□□ 0.16
NUP88-207ENST00000573584 MAN1C1Q9NR34 630 aa16.05■□□□□ 0.16
NUP88-207ENST00000573584 EIF2B3Q9NR50 452 aaKnown RBP16.05■□□□□ 0.16
NUP88-207ENST00000573584 RPS6KL1Q9Y6S9 549 aa16.05■□□□□ 0.16
NUP88-207ENST00000573584 PPEF2O14830 753 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 RAG1P15918 1043 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 VCLP18206 1134 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 GP5P40197 560 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 GARSP41250 739 aaKnown RBP16.04■□□□□ 0.16
NUP88-207ENST00000573584 MSLNQ13421 630 aaPredicted RBP16.04■□□□□ 0.16
NUP88-207ENST00000573584 BIRC2Q13490 618 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 VGLL4Q14135 290 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 TRIP10Q15642 601 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 GADL1Q6ZQY3 521 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 FAM131BQ86XD5 332 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 CXCL16Q9H2A7 254 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 DPEP3Q9H4B8 488 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 SNX15Q9NRS6 342 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 USP3Q9Y6I4 520 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 EVPLQ92817 2033 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 MFSD11O43934 449 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 PSMB4P28070 264 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 ZNF484Q5JVG2 852 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 NT5DC4Q86YG4 428 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 IFNLR1Q8IU57 520 aaPredicted RBP16.04■□□□□ 0.16
NUP88-207ENST00000573584 CCNYQ8ND76 341 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 TRPM4Q8TD43 1214 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 NLRP7Q8WX94 980 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 AZIN2Q96A70 460 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 ATXN7L3BQ96GX2 97 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 PDGFCQ9NRA1 345 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 ARHGAP26Q9UNA1 814 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 CDY2AQ9Y6F7 541 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 CDY1Q9Y6F8 540 aa16.04■□□□□ 0.16
NUP88-207ENST00000573584 E9PBE3 544 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 KLHL41O60662 606 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 USP2O75604 605 aaPredicted RBP16.03■□□□□ 0.16
NUP88-207ENST00000573584 RTN3O95197 1032 aaPredicted RBP16.03■□□□□ 0.16
NUP88-207ENST00000573584 COX4I1P13073 169 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 ADORA2BP29275 332 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 XIAPP98170 497 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 DLG1Q12959 904 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 CCDC153Q494R4 210 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 MMEL1Q495T6 779 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 FSCBQ5H9T9 825 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 CERS2Q96G23 380 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 OXCT2Q9BYC2 517 aaPredicted RBP16.03■□□□□ 0.16
NUP88-207ENST00000573584 PCDHB12Q9Y5F1 795 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 HCRTO43612 131 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 HSPA4LO95757 839 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 GRTP1Q5TC63 336 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 DCLK2Q8N568 766 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 ZNF781Q8N8C0 355 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 PGLYRP2Q96PD5 576 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 CPNE1Q99829 537 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 FERMT1Q9BQL6 677 aa16.03■□□□□ 0.16
NUP88-207ENST00000573584 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.03■□□□□ 0.16
NUP88-207ENST00000573584 MYO18AQ92614 2054 aaKnown RBP16.02■□□□□ 0.16
NUP88-207ENST00000573584 ZBTB14O43829 449 aa16.02■□□□□ 0.16
NUP88-207ENST00000573584 TSPAN1O60635 241 aa16.02■□□□□ 0.16
NUP88-207ENST00000573584 PDGFRBP09619 1106 aa16.02■□□□□ 0.16
NUP88-207ENST00000573584 CCDC130P13994 396 aa16.02■□□□□ 0.16
NUP88-207ENST00000573584 PLD6Q8N2A8 252 aaKnown RBP16.02■□□□□ 0.16
NUP88-207ENST00000573584 DMAP1Q9NPF5 467 aaPredicted RBP16.02■□□□□ 0.16
NUP88-207ENST00000573584 SF3B1O75533 1304 aaKnown RBP eCLIP16.02■□□□□ 0.169e-6■■■■■ 68.9
NUP88-207ENST00000573584 MTTPP55157 894 aa16.02■□□□□ 0.15
NUP88-207ENST00000573584 BST2Q10589 180 aaKnown RBP16.02■□□□□ 0.15
NUP88-207ENST00000573584 KLF10Q13118 480 aa16.02■□□□□ 0.15
NUP88-207ENST00000573584 ARHGAP17Q68EM7 881 aa16.02■□□□□ 0.15
NUP88-207ENST00000573584 EPGNQ6UW88 154 aa16.02■□□□□ 0.15
NUP88-207ENST00000573584 NME8Q8N427 588 aa16.02■□□□□ 0.15
NUP88-207ENST00000573584 FCRL3Q96P31 734 aaPredicted RBP16.02■□□□□ 0.15
NUP88-207ENST00000573584 CDH19Q9H159 772 aa16.02■□□□□ 0.15
NUP88-207ENST00000573584 TRIP11Q15643 1979 aa16.02■□□□□ 0.15
NUP88-207ENST00000573584 CYP2C8P10632 490 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 GTF2A2P52657 109 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 IFRD2Q12894 506 aaPredicted RBP16.01■□□□□ 0.15
NUP88-207ENST00000573584 SLC9B1Q4ZJI4 515 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 MAP3K21Q5TCX8 1036 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 ZNF772Q68DY9 489 aaPredicted RBP16.01■□□□□ 0.15
NUP88-207ENST00000573584 NAPRTQ6XQN6 538 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 KBTBD6Q86V97 674 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 ZNF567Q8N184 647 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 ANKRD52Q8NB46 1076 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 AGR3Q8TD06 166 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 ZMAT2Q96NC0 199 aaKnown RBP16.01■□□□□ 0.15
NUP88-207ENST00000573584 KCNK16Q96T55 309 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 ETAA1Q9NY74 926 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 FZD10Q9ULW2 581 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 FZD9O00144 591 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 TXNDC9O14530 226 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 PRDX6P30041 224 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 GLUD2P49448 558 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 OLIG2Q13516 323 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 TTLL4Q14679 1199 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 KCTD2Q14681 263 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 GRAMD1BQ3KR37 738 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 SPANXN3Q5MJ09 141 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 STRADAQ7RTN6 431 aa16.01■□□□□ 0.15
NUP88-207ENST00000573584 STRA8Q7Z7C7 330 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms